RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	ARHGEF38	Q9NXL2	777 aa		4.26	□□□□□ -1.73
CD44-223	ENST00000526553	GIMAP2	Q9UG22	337 aa		4.26	□□□□□ -1.73
CD44-223	ENST00000526553	ZHX1	Q9UKY1	873 aa	Predicted RBP	4.26	□□□□□ -1.73
CD44-223	ENST00000526553	GLOD5	A6NK44	160 aa		4.25	□□□□□ -1.73
CD44-223	ENST00000526553	OR6C76	A6NM76	312 aa		4.25	□□□□□ -1.73
CD44-223	ENST00000526553	MAGEB17	A8MXT2	336 aa		4.25	□□□□□ -1.73
CD44-223	ENST00000526553	CLPTM1	O96005	669 aa		4.25	□□□□□ -1.73
CD44-223	ENST00000526553	CD48	P09326	243 aa		4.25	□□□□□ -1.73
CD44-223	ENST00000526553	ACP2	P11117	423 aa		4.25	□□□□□ -1.73
CD44-223	ENST00000526553	EEF1D	P29692	281 aa	Known RBP	4.25	□□□□□ -1.73
CD44-223	ENST00000526553	VEGFC	P49767	419 aa		4.25	□□□□□ -1.73
CD44-223	ENST00000526553	HILS1	P60008	231 aa		4.25	□□□□□ -1.73
CD44-223	ENST00000526553	ERVK11-1	P61568	191 aa		4.25	□□□□□ -1.73
CD44-223	ENST00000526553	ROR1	Q01973	937 aa		4.25	□□□□□ -1.73
CD44-223	ENST00000526553	NR1D2	Q14995	579 aa		4.25	□□□□□ -1.73
CD44-223	ENST00000526553	C15orf59	Q2T9L4	293 aa	Predicted RBP	4.25	□□□□□ -1.73
CD44-223	ENST00000526553	DHRS7B	Q6IAN0	325 aa	Predicted RBP	4.25	□□□□□ -1.73
CD44-223	ENST00000526553	SYT2	Q8N9I0	419 aa	Predicted RBP	4.25	□□□□□ -1.73
CD44-223	ENST00000526553	POMGNT2	Q8NAT1	580 aa		4.25	□□□□□ -1.73
CD44-223	ENST00000526553	ADAD2	Q8NCV1	583 aa	Known RBP	4.25	□□□□□ -1.73
CD44-223	ENST00000526553	PPFIBP2	Q8ND30	876 aa		4.25	□□□□□ -1.73
CD44-223	ENST00000526553	WDR20	Q8TBZ3	569 aa		4.25	□□□□□ -1.73
CD44-223	ENST00000526553	PRPF31	Q8WWY3	499 aa	Known RBP	4.25	□□□□□ -1.73
CD44-223	ENST00000526553	NEK1	Q96PY6	1258 aa		4.25	□□□□□ -1.73
CD44-223	ENST00000526553	OR6C1	Q96RD1	312 aa		4.25	□□□□□ -1.73
CD44-223	ENST00000526553	C16orf70	Q9BSU1	422 aa		4.25	□□□□□ -1.73
CD44-223	ENST00000526553	PELI2	Q9HAT8	420 aa		4.25	□□□□□ -1.73
CD44-223	ENST00000526553	ACKR4	Q9NPB9	350 aa		4.25	□□□□□ -1.73
CD44-223	ENST00000526553	KCNJ14	Q9UNX9	436 aa		4.25	□□□□□ -1.73
CD44-223	ENST00000526553	LOC100509620	A0A075B734	347 aa		4.24	□□□□□ -1.73
CD44-223	ENST00000526553		A0A1W2PRB8	838 aa		4.24	□□□□□ -1.73
CD44-223	ENST00000526553	PSMD14	O00487	310 aa		4.24	□□□□□ -1.73
CD44-223	ENST00000526553	PRAMEF11	O60813	436 aa		4.24	□□□□□ -1.73
CD44-223	ENST00000526553	ENTPD3	O75355	529 aa		4.24	□□□□□ -1.73
CD44-223	ENST00000526553	AVIL	O75366	819 aa		4.24	□□□□□ -1.73
CD44-223	ENST00000526553	NRIP1	P48552	1158 aa		4.24	□□□□□ -1.73
CD44-223	ENST00000526553	FCN2	Q15485	313 aa		4.24	□□□□□ -1.73
CD44-223	ENST00000526553	TCP11X2	Q5H9J9	407 aa		4.24	□□□□□ -1.73
CD44-223	ENST00000526553	ARMC3	Q5W041	872 aa		4.24	□□□□□ -1.73
CD44-223	ENST00000526553	SH2D5	Q6ZV89	423 aa		4.24	□□□□□ -1.73
CD44-223	ENST00000526553	DNAAF5	Q86Y56	855 aa		4.24	□□□□□ -1.73
CD44-223	ENST00000526553	SCML4	Q8N228	414 aa		4.24	□□□□□ -1.73
CD44-223	ENST00000526553	AVL9	Q8NBF6	648 aa		4.24	□□□□□ -1.73
CD44-223	ENST00000526553	ZNF248	Q8NDW4	579 aa		4.24	□□□□□ -1.73
CD44-223	ENST00000526553	MOSPD2	Q8NHP6	518 aa		4.24	□□□□□ -1.73
CD44-223	ENST00000526553	CTCFL	Q8NI51	663 aa	Predicted RBP	4.24	□□□□□ -1.73
CD44-223	ENST00000526553	MYADM	Q96S97	322 aa		4.24	□□□□□ -1.73
CD44-223	ENST00000526553	PAFAH2	Q99487	392 aa		4.24	□□□□□ -1.73
CD44-223	ENST00000526553	OR10A4	Q9H209	315 aa		4.24	□□□□□ -1.73
CD44-223	ENST00000526553	ZCCHC17	Q9NP64	241 aa	Known RBP	4.24	□□□□□ -1.73
CD44-223	ENST00000526553	RHCG	Q9UBD6	479 aa		4.24	□□□□□ -1.73
CD44-223	ENST00000526553	KCNK7	Q9Y2U2	307 aa		4.24	□□□□□ -1.73
CD44-223	ENST00000526553	WBP11	Q9Y2W2	641 aa	Known RBP	4.24	□□□□□ -1.73
CD44-223	ENST00000526553	GRIP1	Q9Y3R0	1128 aa		4.24	□□□□□ -1.73
CD44-223	ENST00000526553	SOS1	Q07889	1333 aa	Predicted RBP	4.23	□□□□□ -1.73
CD44-223	ENST00000526553	PLOD2	O00469	737 aa		4.23	□□□□□ -1.73
CD44-223	ENST00000526553	NADK	O95544	446 aa	Predicted RBP	4.23	□□□□□ -1.73
CD44-223	ENST00000526553	IGLV1-44	P01699	117 aa		4.23	□□□□□ -1.73
CD44-223	ENST00000526553	TRIM21	P19474	475 aa	Known RBP	4.23	□□□□□ -1.73
CD44-223	ENST00000526553	CDK3	Q00526	305 aa		4.23	□□□□□ -1.73
CD44-223	ENST00000526553	AIMP1	Q12904	312 aa	Known RBP	4.23	□□□□□ -1.73
CD44-223	ENST00000526553	ITGA9	Q13797	1035 aa		4.23	□□□□□ -1.73
CD44-223	ENST00000526553	PCLAF	Q15004	111 aa		4.23	□□□□□ -1.73
CD44-223	ENST00000526553	KYNU	Q16719	465 aa		4.23	□□□□□ -1.73
CD44-223	ENST00000526553	BMP2KL	Q5H9B9	411 aa		4.23	□□□□□ -1.73
CD44-223	ENST00000526553	ZNF554	Q86TJ5	538 aa		4.23	□□□□□ -1.73
CD44-223	ENST00000526553	KBTBD6	Q86V97	674 aa		4.23	□□□□□ -1.73
CD44-223	ENST00000526553	KCTD6	Q8NC69	237 aa		4.23	□□□□□ -1.73
CD44-223	ENST00000526553	HSD17B8	Q92506	261 aa		4.23	□□□□□ -1.73
CD44-223	ENST00000526553	SLC22A18	Q96BI1	424 aa		4.23	□□□□□ -1.73
CD44-223	ENST00000526553	ZNF653	Q96CK0	615 aa		4.23	□□□□□ -1.73
CD44-223	ENST00000526553	SPATA17	Q96L03	361 aa		4.23	□□□□□ -1.73
CD44-223	ENST00000526553	RTP3	Q9BQQ7	232 aa		4.23	□□□□□ -1.73
CD44-223	ENST00000526553	APOL6	Q9BWW8	343 aa		4.23	□□□□□ -1.73
CD44-223	ENST00000526553	VN1R1	Q9GZP7	353 aa		4.23	□□□□□ -1.73
CD44-223	ENST00000526553	MMP27	Q9H306	513 aa		4.23	□□□□□ -1.73
CD44-223	ENST00000526553	ERVMER34-1	Q9H9K5	563 aa		4.23	□□□□□ -1.73
CD44-223	ENST00000526553	CCDC177	Q9NQR7	707 aa	Predicted RBP	4.23	□□□□□ -1.73
CD44-223	ENST00000526553	EXOSC5	Q9NQT4	235 aa	Known RBP eCLIP	4.23	□□□□□ -1.73
CD44-223	ENST00000526553	TAB2	Q9NYJ8	693 aa		4.23	□□□□□ -1.73
CD44-223	ENST00000526553	CPSF2	Q9P2I0	782 aa	Known RBP	4.23	□□□□□ -1.73
CD44-223	ENST00000526553	OSGIN1	Q9UJX0	560 aa		4.23	□□□□□ -1.73
CD44-223	ENST00000526553	NME7	Q9Y5B8	376 aa		4.23	□□□□□ -1.73
CD44-223	ENST00000526553	FAM169A	Q9Y6X4	670 aa		4.23	□□□□□ -1.73
CD44-223	ENST00000526553		A0A1W2PN81	502 aa		4.22	□□□□□ -1.73
CD44-223	ENST00000526553		A8MV72	311 aa	Predicted RBP	4.22	□□□□□ -1.73
CD44-223	ENST00000526553	HEPACAM2	A8MVW5	462 aa		4.22	□□□□□ -1.73
CD44-223	ENST00000526553		E9PI62	339 aa		4.22	□□□□□ -1.73
CD44-223	ENST00000526553	NR5A2	O00482	541 aa		4.22	□□□□□ -1.73
CD44-223	ENST00000526553	UBE2C	O00762	179 aa		4.22	□□□□□ -1.73
CD44-223	ENST00000526553	TBCA	O75347	108 aa	Known RBP	4.22	□□□□□ -1.73
CD44-223	ENST00000526553	EML2	O95834	649 aa		4.22	□□□□□ -1.73
CD44-223	ENST00000526553	SERPINB2	P05120	415 aa		4.22	□□□□□ -1.73
CD44-223	ENST00000526553	FRMD6-AS1	P0C7T7	363 aa		4.22	□□□□□ -1.73
CD44-223	ENST00000526553	FAM157C	P0CG43	387 aa		4.22	□□□□□ -1.73
CD44-223	ENST00000526553	CHRNA7	P36544	502 aa		4.22	□□□□□ -1.73
CD44-223	ENST00000526553	STAT2	P52630	851 aa		4.22	□□□□□ -1.73
CD44-223	ENST00000526553	CDH11	P55287	796 aa		4.22	□□□□□ -1.73
CD44-223	ENST00000526553	KCNJ10	P78508	379 aa		4.22	□□□□□ -1.73
CD44-223	ENST00000526553	LGALS3BP	Q08380	585 aa		4.22	□□□□□ -1.73

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