RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 OSBPL6Q9BZF3 934 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 CXorf21Q9HAI6 301 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 C1orf109Q9NX04 203 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 LOC730098B7Z3J9 87 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 KRT6AP02538 564 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 KRT6BP04259 564 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 ALPLP05186 524 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 KRT6CP48668 564 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 HLCSP50747 726 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 ZXDBP98169 803 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 PLIN5Q00G26 463 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 HMGCS1Q01581 520 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 TXNDC8Q6A555 127 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 ITIH5Q86UX2 942 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 ZDHHC13Q8IUH4 622 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 REM2Q8IYK8 340 aaPredicted RBP20.8■□□□□ 0.92
VPS28-205ENST00000526204 RGL4Q8IZJ4 473 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 NUDT8Q8WV74 236 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 SDCCAG3Q96C92 435 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 HIPK3Q9H422 1215 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 FARSBQ9NSD9 589 aaKnown RBP20.8■□□□□ 0.92
VPS28-205ENST00000526204 ABCB8Q9NUT2 735 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 KIAA1522Q9P206 1035 aaPredicted RBP20.8■□□□□ 0.92
VPS28-205ENST00000526204 ZNF510Q9Y2H8 683 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 SCELO95171 688 aa20.79■□□□□ 0.92
VPS28-205ENST00000526204 THRBP10828 461 aa20.79■□□□□ 0.92
VPS28-205ENST00000526204 PCSK2P16519 638 aa20.79■□□□□ 0.92
VPS28-205ENST00000526204 HOXB6P17509 224 aaKnown RBP20.79■□□□□ 0.92
VPS28-205ENST00000526204 MTHFRP42898 656 aa20.79■□□□□ 0.92
VPS28-205ENST00000526204 DHRS4L2Q6PKH6 230 aa20.79■□□□□ 0.92
VPS28-205ENST00000526204 NECAB2Q7Z6G3 386 aa20.79■□□□□ 0.92
VPS28-205ENST00000526204 CLEC4FQ8N1N0 589 aa20.79■□□□□ 0.92
VPS28-205ENST00000526204 OR10A6Q8NH74 314 aa20.79■□□□□ 0.92
VPS28-205ENST00000526204 TMEM169Q96HH4 297 aa20.79■□□□□ 0.92
VPS28-205ENST00000526204 GPBP1L1Q9HC44 474 aaPredicted RBP20.79■□□□□ 0.92
VPS28-205ENST00000526204 DNAJB9Q9UBS3 223 aa20.79■□□□□ 0.92
VPS28-205ENST00000526204 ADGRE2Q9UHX3 823 aa20.79■□□□□ 0.92
VPS28-205ENST00000526204 INSL5Q9Y5Q6 135 aa20.79■□□□□ 0.92
VPS28-205ENST00000526204 ELOVL7A1L3X0 281 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 KLHL33A6NCF5 533 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 EIF3FO00303 357 aaPredicted RBP20.78■□□□□ 0.92
VPS28-205ENST00000526204 AOC2O75106 756 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 CLDN9O95484 217 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 GKP32189 559 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 EPS8Q12929 822 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 ARHGEF7Q14155 803 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 SPANXN4Q5MJ08 99 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 SPOUT1Q5T280 376 aaKnown RBP20.78■□□□□ 0.92
VPS28-205ENST00000526204 FAM9CQ8IZT9 166 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 CPXM2Q8N436 756 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 OR2AP1Q8NGE2 309 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 AURKBQ96GD4 344 aaPredicted RBP20.78■□□□□ 0.92
VPS28-205ENST00000526204 TUBA1CQ9BQE3 449 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 LIN28AQ9H9Z2 209 aaKnown RBP20.78■□□□□ 0.92
VPS28-205ENST00000526204 ZFP14Q9HCL3 533 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 ZNF334Q9HCZ1 680 aaPredicted RBP20.78■□□□□ 0.92
VPS28-205ENST00000526204 ZDHHC3Q9NYG2 299 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 TET1Q8NFU7 2136 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 CXorf51AA0A1B0GTR3 108 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 CCL23P55773 120 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 BIRC2Q13490 618 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 PLCL1Q15111 1095 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 MPPE1Q53F39 396 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 RUNDC3AQ59EK9 446 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 SGO1Q5FBB7 561 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 LIN28BQ6ZN17 250 aaKnown RBP eCLIP20.78■□□□□ 0.92
VPS28-205ENST00000526204 STK32CQ86UX6 486 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 TTC16Q8NEE8 873 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 SLC22A17Q8WUG5 538 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 C12orf43Q96C57 262 aaKnown RBP20.78■□□□□ 0.92
VPS28-205ENST00000526204 CNDP2Q96KP4 475 aaKnown RBP20.78■□□□□ 0.92
VPS28-205ENST00000526204 OR52E6Q96RD3 313 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 HERC2P3Q9BVR0 1158 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 CFHR5Q9BXR6 569 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 SLC32A1Q9H598 525 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 LIMD1Q9UGP4 676 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 EBF1Q9UH73 591 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 MAFFQ9ULX9 164 aa20.78■□□□□ 0.92
VPS28-205ENST00000526204 G3V2T6 193 aa20.77■□□□□ 0.92
VPS28-205ENST00000526204 PQBP1O60828 265 aaKnown RBP20.77■□□□□ 0.92
VPS28-205ENST00000526204 GGT5P36269 586 aa20.77■□□□□ 0.92
VPS28-205ENST00000526204 PMS2P3Q13401 168 aa20.77■□□□□ 0.92
VPS28-205ENST00000526204 USP39Q53GS9 565 aaKnown RBP20.77■□□□□ 0.92
VPS28-205ENST00000526204 ATG9BQ674R7 924 aa20.77■□□□□ 0.92
VPS28-205ENST00000526204 TPRG1Q6ZUI0 275 aa20.77■□□□□ 0.92
VPS28-205ENST00000526204 HTR3DQ70Z44 454 aa20.77■□□□□ 0.92
VPS28-205ENST00000526204 SVOPLQ8N434 492 aa20.77■□□□□ 0.92
VPS28-205ENST00000526204 FIBINQ8TAL6 211 aa20.77■□□□□ 0.92
VPS28-205ENST00000526204 EZH1Q92800 747 aaPredicted RBP20.77■□□□□ 0.92
VPS28-205ENST00000526204 ASIC4Q96FT7 647 aa20.77■□□□□ 0.92
VPS28-205ENST00000526204 ZNF558Q96NG5 402 aa20.77■□□□□ 0.92
VPS28-205ENST00000526204 MUS81Q96NY9 551 aa20.77■□□□□ 0.92
VPS28-205ENST00000526204 DOK1Q99704 481 aa20.77■□□□□ 0.92
VPS28-205ENST00000526204 TNKS2Q9H2K2 1166 aa20.77■□□□□ 0.92
VPS28-205ENST00000526204 SOX17Q9H6I2 414 aaPredicted RBP20.77■□□□□ 0.92
VPS28-205ENST00000526204 ACTR8Q9H981 624 aa20.77■□□□□ 0.92
VPS28-205ENST00000526204 POLR1BQ9H9Y6 1135 aa20.77■□□□□ 0.92
VPS28-205ENST00000526204 IL21Q9HBE4 155 aa20.77■□□□□ 0.92
VPS28-205ENST00000526204 MRPL17Q9NRX2 175 aaKnown RBP20.77■□□□□ 0.92
VPS28-205ENST00000526204 CIDEBQ9UHD4 219 aa20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms