RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 ULK4Q96C45 1275 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 EID2BQ96D98 161 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 SH3YL1Q96HL8 342 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 GPN2Q9H9Y4 310 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 WWOXQ9NZC7 414 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 BLOC1S6Q9UL45 172 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 ZNF490Q9ULM2 529 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 VPS9D1Q9Y2B5 631 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 LOC730098B7Z3J9 87 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 ULK1O75385 1050 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 CREG1O75629 220 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 SULT1C4O75897 302 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 CR2P20023 1033 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 GP2P55259 537 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 ZNF177Q13360 481 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 RAPSNQ13702 412 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 TUBA3CQ13748 450 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 CBX2Q14781 532 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 PAGE2BQ5JRK9 111 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 ATXN7L2Q5T6C5 722 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 RNF219Q5W0B1 726 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 SUSD1Q6UWL2 747 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 SLC16A12Q6ZSM3 486 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 SLCO6A1Q86UG4 719 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 DCP2Q8IU60 420 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 RGL4Q8IZJ4 473 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 EID3Q8N140 333 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 C2orf69Q8N8R5 385 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 OR8J3Q8NGG0 315 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 LKAAEAR1Q8TD35 194 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 RHBDF1Q96CC6 855 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 FAM120BQ96EK7 910 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 MAGED4Q96JG8 741 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 CNDP2Q96KP4 475 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 PPP3R2Q96LZ3 170 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 TSSK3Q96PN8 268 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 MYOCQ99972 504 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 RBM4BQ9BQ04 359 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 RHNO1Q9BSD3 238 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 RBM4Q9BWF3 364 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 TM6SF2Q9BZW4 377 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 LATS2Q9NRM7 1088 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 NUDT4Q9NZJ9 180 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 ERVK-18Q9QC07 812 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 C3orf18Q9UK00 162 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 FBXO10Q9UK96 956 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 DHRS7Q9Y394 339 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 DOCK4Q8N1I0 1966 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 DYTNA2CJ06 578 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 NDUFS2O75306 463 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 LRATO95237 230 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 ZNF682O95780 498 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 IGLV3-27P01718 113 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 C1QCP02747 245 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 ESR1P03372 595 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 KLKB1P03952 638 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 PTGER3P43115 390 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 RIBC2Q9H4K1 309 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 GORASP2Q9H8Y8 452 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 AFF4Q9UHB7 1163 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 PRRC2BQ5JSZ5 2229 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 IQCA1LA6NCM1 817 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 MYO1GB0I1T2 1018 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 CLDN25C9JDP6 229 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 RAD51BO15315 384 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 TAPBPO15533 448 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 JAK1P23458 1154 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 GNPDA1P46926 289 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 MRPL19P49406 292 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 EMX1Q04741 257 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 CES5AQ6NT32 575 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 ADAMTSL2Q86TH1 951 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 MICU2Q8IYU8 434 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 TTC30BQ8N4P2 665 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 ARL10Q8N8L6 244 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 ZFP90Q8TF47 636 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 GLMNQ92990 594 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 ADGRE3Q9BY15 652 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 CLPBQ9H078 707 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 ARIH1Q9Y4X5 557 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 TNPO3Q9Y5L0 923 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 MTMR11A4FU01 709 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 UPK3BL1B0FP48 263 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 UPK3BL2E5RIL1 263 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 M0R3G1 203 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 RGS14O43566 566 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 SLC25A14O95258 325 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 ANGPTL1O95841 491 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 MSH3P20585 1137 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 NEK2P51955 445 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 PHC1P78364 1004 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 ARHGEF7Q14155 803 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 PCBP2Q15366 365 aaKnown RBP eCLIP9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 KCNA10Q16322 511 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 ADHFE1Q8IWW8 467 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 TAMM41Q96BW9 452 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 FEM1AQ9BSK4 669 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 VNN3Q9NY84 501 aa9.07□□□□□ -0.96
LIMCH1-215ENST00000512632 OPTCQ9UBM4 332 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms