RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 TSPAN33Q86UF1 283 aa2.23□□□□□ -2.05
NUP54-208ENST00000508604 SLC25A42Q86VD7 318 aa2.23□□□□□ -2.05
NUP54-208ENST00000508604 CNTROBQ8N137 903 aa2.23□□□□□ -2.05
NUP54-208ENST00000508604 ABHD12Q8N2K0 398 aa2.23□□□□□ -2.05
NUP54-208ENST00000508604 PARP8Q8N3A8 854 aa2.23□□□□□ -2.05
NUP54-208ENST00000508604 METTL4Q8N3J2 472 aa2.23□□□□□ -2.05
NUP54-208ENST00000508604 ATP8B4Q8TF62 1192 aa2.23□□□□□ -2.05
NUP54-208ENST00000508604 PDLIM5Q96HC4 596 aaKnown RBP2.23□□□□□ -2.05
NUP54-208ENST00000508604 PIP5K1AQ99755 562 aa2.23□□□□□ -2.05
NUP54-208ENST00000508604 SLA2Q9H6Q3 261 aa2.23□□□□□ -2.05
NUP54-208ENST00000508604 HHATLQ9HCP6 504 aa2.23□□□□□ -2.05
NUP54-208ENST00000508604 SDR39U1Q9NRG7 319 aaPredicted RBP2.23□□□□□ -2.05
NUP54-208ENST00000508604 OR6C2Q9NZP2 312 aa2.23□□□□□ -2.05
NUP54-208ENST00000508604 ZNF107Q9UII5 783 aaPredicted RBP2.23□□□□□ -2.05
NUP54-208ENST00000508604 OSGIN1Q9UJX0 560 aa2.23□□□□□ -2.05
NUP54-208ENST00000508604 PNMA2Q9UL42 364 aa2.23□□□□□ -2.05
NUP54-208ENST00000508604 NTNG1Q9Y2I2 539 aa2.23□□□□□ -2.05
NUP54-208ENST00000508604 A8MXK9 166 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 SRRM5B3KS81 715 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 OGG1O15527 345 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 TMEM11P17152 192 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 HARS2P49590 506 aaKnown RBP2.22□□□□□ -2.05
NUP54-208ENST00000508604 PDX1P52945 283 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 GALCP54803 685 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 SNRPEP62304 92 aaKnown RBP2.22□□□□□ -2.05
NUP54-208ENST00000508604 RSBN1Q5VWQ0 802 aaPredicted RBP2.22□□□□□ -2.05
NUP54-208ENST00000508604 ACSM2BQ68CK6 577 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 LINGO4Q6UY18 593 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 KIF6Q6ZMV9 814 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 ARMC8Q8IUR7 673 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 MAPKAPK5-AS1Q8N8E1 139 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 ABHD6Q9BV23 337 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 GNB4Q9HAV0 340 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 NYAP2Q9P242 653 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 COL16A1Q07092 1604 aaPredicted RBP2.22□□□□□ -2.05
NUP54-208ENST00000508604 ARHGEF40Q8TER5 1519 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 KDM3AQ9Y4C1 1321 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 NDUFS4O43181 175 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 CCNDBP1O95273 360 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 HPP00738 406 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 GH2P01242 217 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 HOXD4P09016 255 aaPredicted RBP2.22□□□□□ -2.05
NUP54-208ENST00000508604 FOLR2P14207 255 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 LHCGRP22888 699 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 IL4RP24394 825 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 ABCD3P28288 659 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 OXTRP30559 389 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 HALP42357 657 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 LYZP61626 148 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 CX3CL1P78423 397 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 FCHO2Q0JRZ9 810 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 DLG2Q15700 870 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 OLFML2AQ68BL7 652 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 SUMF1Q8NBK3 374 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 AQP11Q8NBQ7 271 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 TMEM116Q8NCL8 245 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 PKNOX2Q96KN3 472 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 FAM81BQ96LP2 452 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 HEXA-AS1Q9H8Q6 139 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 SCPEP1Q9HB40 452 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 A4GALTQ9NPC4 353 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 FGF21Q9NSA1 209 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 RRP7BPQ9NSQ0 103 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 NPAP1Q9NZP6 1156 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 VSIG4Q9Y279 399 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 ZNF256Q9Y2P7 627 aaPredicted RBP2.22□□□□□ -2.05
NUP54-208ENST00000508604 GPR52Q9Y2T5 361 aa2.22□□□□□ -2.05
NUP54-208ENST00000508604 PEX14O75381 377 aa2.21□□□□□ -2.06
NUP54-208ENST00000508604 POLBP06746 335 aa2.21□□□□□ -2.06
NUP54-208ENST00000508604 SPARCP09486 303 aa2.21□□□□□ -2.06
NUP54-208ENST00000508604 HSD3B1P14060 373 aa2.21□□□□□ -2.06
NUP54-208ENST00000508604 EPHA8P29322 1005 aaPredicted RBP2.21□□□□□ -2.06
NUP54-208ENST00000508604 RHBDL3P58872 404 aa2.21□□□□□ -2.06
NUP54-208ENST00000508604 ZSCAN23Q3MJ62 389 aa2.21□□□□□ -2.06
NUP54-208ENST00000508604 KLHL26Q53HC5 615 aa2.21□□□□□ -2.06
NUP54-208ENST00000508604 EIPR1Q53HC9 387 aa2.21□□□□□ -2.06
NUP54-208ENST00000508604 MDH1BQ5I0G3 518 aa2.21□□□□□ -2.06
NUP54-208ENST00000508604 NOTUMQ6P988 496 aa2.21□□□□□ -2.06
NUP54-208ENST00000508604 ZNF841Q6ZN19 808 aa2.21□□□□□ -2.06
NUP54-208ENST00000508604 CEACAM19Q7Z692 300 aa2.21□□□□□ -2.06
NUP54-208ENST00000508604 NPRL2Q8WTW4 380 aa2.21□□□□□ -2.06
NUP54-208ENST00000508604 CHPT1Q8WUD6 406 aa2.21□□□□□ -2.06
NUP54-208ENST00000508604 ZIM3Q96PE6 472 aa2.21□□□□□ -2.06
NUP54-208ENST00000508604 DDOQ99489 341 aa2.21□□□□□ -2.06
NUP54-208ENST00000508604 ANP32EQ9BTT0 268 aa2.21□□□□□ -2.06
NUP54-208ENST00000508604 HGH1Q9BTY7 390 aa2.21□□□□□ -2.06
NUP54-208ENST00000508604 ANAPC11Q9NYG5 84 aa2.21□□□□□ -2.06
NUP54-208ENST00000508604 ZNF510Q9Y2H8 683 aa2.21□□□□□ -2.06
NUP54-208ENST00000508604 CSNK1G3Q9Y6M4 447 aa2.21□□□□□ -2.06
NUP54-208ENST00000508604 LOC105371242A0A075B767 164 aa2.2□□□□□ -2.06
NUP54-208ENST00000508604 ANKRD61A6NGH8 418 aa2.2□□□□□ -2.06
NUP54-208ENST00000508604 GAPDHSO14556 408 aaPredicted RBP2.2□□□□□ -2.06
NUP54-208ENST00000508604 TFECO14948 347 aaPredicted RBP2.2□□□□□ -2.06
NUP54-208ENST00000508604 EPHB6O15197 1021 aa2.2□□□□□ -2.06
NUP54-208ENST00000508604 AVILO75366 819 aa2.2□□□□□ -2.06
NUP54-208ENST00000508604 UBL4AP11441 157 aa2.2□□□□□ -2.06
NUP54-208ENST00000508604 XBP1P17861 261 aa2.2□□□□□ -2.06
NUP54-208ENST00000508604 KLK2P20151 261 aa2.2□□□□□ -2.06
NUP54-208ENST00000508604 ACADLP28330 430 aa2.2□□□□□ -2.06
NUP54-208ENST00000508604 HLA-FP30511 346 aa2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms