RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 APOBEC3GQ9HC16 384 aaKnown RBP3.83□□□□□ -1.8
HMGB1P28-201ENST00000507778 TCF7L2Q9NQB0 619 aa3.83□□□□□ -1.8
HMGB1P28-201ENST00000507778 PTTG2Q9NZH5 202 aa3.83□□□□□ -1.8
HMGB1P28-201ENST00000507778 CPSF3Q9UKF6 684 aaKnown RBP3.83□□□□□ -1.8
HMGB1P28-201ENST00000507778 ABT1Q9ULW3 272 aaKnown RBP3.83□□□□□ -1.8
HMGB1P28-201ENST00000507778 A0A1W2PPQ1 181 aa3.82□□□□□ -1.8
HMGB1P28-201ENST00000507778 KCNAB3O43448 404 aa3.82□□□□□ -1.8
HMGB1P28-201ENST00000507778 SYNCRIPO60506 623 aaKnown RBP3.82□□□□□ -1.8
HMGB1P28-201ENST00000507778 PENKP01210 267 aaPredicted RBP3.82□□□□□ -1.8
HMGB1P28-201ENST00000507778 CETPP11597 493 aa3.82□□□□□ -1.8
HMGB1P28-201ENST00000507778 GLULP15104 373 aa3.82□□□□□ -1.8
HMGB1P28-201ENST00000507778 IFNAR1P17181 557 aa3.82□□□□□ -1.8
HMGB1P28-201ENST00000507778 SLC6A6P31641 620 aa3.82□□□□□ -1.8
HMGB1P28-201ENST00000507778 ASCL1P50553 236 aa3.82□□□□□ -1.8
HMGB1P28-201ENST00000507778 IRX6P78412 446 aaPredicted RBP3.82□□□□□ -1.8
HMGB1P28-201ENST00000507778 PRKCZQ05513 592 aa3.82□□□□□ -1.8
HMGB1P28-201ENST00000507778 ACSM1Q08AH1 577 aa3.82□□□□□ -1.8
HMGB1P28-201ENST00000507778 MFSD12Q6NUT3 480 aa3.82□□□□□ -1.8
HMGB1P28-201ENST00000507778 FOXL2NBQ6ZUU3 175 aa3.82□□□□□ -1.8
HMGB1P28-201ENST00000507778 GALNTL5Q7Z4T8 443 aa3.82□□□□□ -1.8
HMGB1P28-201ENST00000507778 METTL23Q86XA0 190 aa3.82□□□□□ -1.8
HMGB1P28-201ENST00000507778 IQUBQ8NA54 791 aa3.82□□□□□ -1.8
HMGB1P28-201ENST00000507778 DMBX1Q8NFW5 382 aa3.82□□□□□ -1.8
HMGB1P28-201ENST00000507778 SETD6Q8TBK2 473 aa3.82□□□□□ -1.8
HMGB1P28-201ENST00000507778 SCRN2Q96FV2 425 aa3.82□□□□□ -1.8
HMGB1P28-201ENST00000507778 ZNF583Q96ND8 569 aa3.82□□□□□ -1.8
HMGB1P28-201ENST00000507778 FEVQ99581 238 aa3.82□□□□□ -1.8
HMGB1P28-201ENST00000507778 EGFL8Q99944 293 aa3.82□□□□□ -1.8
HMGB1P28-201ENST00000507778 MYNNQ9NPC7 610 aa3.82□□□□□ -1.8
HMGB1P28-201ENST00000507778 OLFML3Q9NRN5 406 aa3.82□□□□□ -1.8
HMGB1P28-201ENST00000507778 B3GAT1Q9P2W7 334 aa3.82□□□□□ -1.8
HMGB1P28-201ENST00000507778 LIPGQ9Y5X9 500 aa3.82□□□□□ -1.8
HMGB1P28-201ENST00000507778 A0A1B0GUV1 79 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 NEMP2A6NFY4 417 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 CLDN4O14493 209 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 PTGESO14684 152 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 BUB3O43684 328 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 IGHV2-70P01814 119 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 ATP1A1P05023 1023 aaKnown RBP3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 ATP5BP06576 529 aaKnown RBP3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 GP5P40197 560 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 NPY4RP50391 375 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 THOP1P52888 689 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 MAPK12P53778 367 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 CX3CL1P78423 397 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 PPARDQ03181 441 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 ILF3Q12906 894 aaKnown RBP eCLIP3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 ZNF273Q14593 569 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 HECTD3Q5T447 861 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 WBP2NLQ6ICG8 309 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 PRR27Q6MZM9 219 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 KIAA1161Q6NSJ0 714 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 SUSD1Q6UWL2 747 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 PPP1R21Q6ZMI0 780 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 C9orf139Q6ZV77 190 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 TMPRSS11BQ86T26 416 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 ARHGAP24Q8N264 748 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 ZNF611Q8N823 705 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 C9orf106Q8NAJ2 232 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 CCDC107Q8WV48 283 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 SSMEM1Q8WWF3 244 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 SYN2Q92777 582 aaPredicted RBP3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 EXT2Q93063 718 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 SPSB1Q96BD6 273 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 PKP4Q99569 1192 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 TRAF4Q9BUZ4 470 aaPredicted RBP3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 ZWILCHQ9H900 591 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 UPF2Q9HAU5 1272 aaKnown RBP3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 ZBTB20Q9HC78 741 aaPredicted RBP3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 SERINC1Q9NRX5 453 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 TBC1D7Q9P0N9 293 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 FRMD4AQ9P2Q2 1039 aaPredicted RBP3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 RNF150Q9ULK6 438 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 FAF1Q9UNN5 650 aaPredicted RBP3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 JRKLQ9Y4A0 524 aa3.81□□□□□ -1.8
HMGB1P28-201ENST00000507778 SOS1Q07889 1333 aaPredicted RBP3.8□□□□□ -1.8
HMGB1P28-201ENST00000507778 A0A1W2PRB8 838 aa3.8□□□□□ -1.8
HMGB1P28-201ENST00000507778 E9PI62 339 aa3.8□□□□□ -1.8
HMGB1P28-201ENST00000507778 GAPDHSO14556 408 aaPredicted RBP3.8□□□□□ -1.8
HMGB1P28-201ENST00000507778 WDR46O15213 610 aaKnown RBP3.8□□□□□ -1.8
HMGB1P28-201ENST00000507778 WDPCPO95876 746 aa3.8□□□□□ -1.8
HMGB1P28-201ENST00000507778 HSP90AB1P08238 724 aaKnown RBP3.8□□□□□ -1.8
HMGB1P28-201ENST00000507778 F7P08709 466 aaPredicted RBP3.8□□□□□ -1.8
HMGB1P28-201ENST00000507778 AMD1P17707 334 aa3.8□□□□□ -1.8
HMGB1P28-201ENST00000507778 MSH3P20585 1137 aa3.8□□□□□ -1.8
HMGB1P28-201ENST00000507778 TCEA1P23193 301 aaKnown RBP3.8□□□□□ -1.8
HMGB1P28-201ENST00000507778 MPZP25189 248 aa3.8□□□□□ -1.8
HMGB1P28-201ENST00000507778 HOXC8P31273 242 aa3.8□□□□□ -1.8
HMGB1P28-201ENST00000507778 ERVFC1-1P60608 527 aa3.8□□□□□ -1.8
HMGB1P28-201ENST00000507778 POLR2LP62875 67 aaKnown RBP3.8□□□□□ -1.8
HMGB1P28-201ENST00000507778 ALDH1L2Q3SY69 923 aa3.8□□□□□ -1.8
HMGB1P28-201ENST00000507778 ACCSLQ4AC99 568 aa3.8□□□□□ -1.8
HMGB1P28-201ENST00000507778 SYT14P1Q58G82 188 aa3.8□□□□□ -1.8
HMGB1P28-201ENST00000507778 DCLRE1AQ6PJP8 1040 aa3.8□□□□□ -1.8
HMGB1P28-201ENST00000507778 PET117Q6UWS5 81 aa3.8□□□□□ -1.8
HMGB1P28-201ENST00000507778 NFE4Q86UQ8 179 aa3.8□□□□□ -1.8
HMGB1P28-201ENST00000507778 CFAP206Q8IYR0 622 aa3.8□□□□□ -1.8
HMGB1P28-201ENST00000507778 CCAR2Q8N163 923 aaKnown RBP3.8□□□□□ -1.8
HMGB1P28-201ENST00000507778 RFLNBQ8N5W9 214 aa3.8□□□□□ -1.8
HMGB1P28-201ENST00000507778 TRIML1Q8N9V2 468 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms