RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 DEFB119Q8N690 84 aa13.82□□□□□ -0.2
TCOF1-207ENST00000504761 ANKLE1Q8NAG6 615 aa13.82□□□□□ -0.2
TCOF1-207ENST00000504761 CCM2Q9BSQ5 444 aa13.82□□□□□ -0.2
TCOF1-207ENST00000504761 DHRS7Q9Y394 339 aa13.82□□□□□ -0.2
TCOF1-207ENST00000504761 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.82□□□□□ -0.2
TCOF1-207ENST00000504761 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.82□□□□□ -0.2
TCOF1-207ENST00000504761 BBIP1A8MTZ0 92 aa13.82□□□□□ -0.2
TCOF1-207ENST00000504761 BHMG1C9JSJ3 638 aaPredicted RBP13.82□□□□□ -0.2
TCOF1-207ENST00000504761 MUSKO15146 869 aa13.82□□□□□ -0.2
TCOF1-207ENST00000504761 ANXA6P08133 673 aa13.82□□□□□ -0.2
TCOF1-207ENST00000504761 CD1DP15813 335 aa13.82□□□□□ -0.2
TCOF1-207ENST00000504761 ZNF8P17098 575 aaPredicted RBP13.82□□□□□ -0.2
TCOF1-207ENST00000504761 CCNFP41002 786 aa13.82□□□□□ -0.2
TCOF1-207ENST00000504761 BNIP2Q12982 314 aa13.82□□□□□ -0.2
TCOF1-207ENST00000504761 NEDD8Q15843 81 aa13.82□□□□□ -0.2
TCOF1-207ENST00000504761 C16orf87Q6PH81 154 aa13.82□□□□□ -0.2
TCOF1-207ENST00000504761 KLHDC10Q6PID8 442 aa13.82□□□□□ -0.2
TCOF1-207ENST00000504761 EPGNQ6UW88 154 aa13.82□□□□□ -0.2
TCOF1-207ENST00000504761 C6orf89Q6UWU4 347 aa13.82□□□□□ -0.2
TCOF1-207ENST00000504761 GOLGA7Q7Z5G4 137 aa13.82□□□□□ -0.2
TCOF1-207ENST00000504761 SHKBP1Q8TBC3 707 aa13.82□□□□□ -0.2
TCOF1-207ENST00000504761 BCL7CQ8WUZ0 217 aaPredicted RBP13.82□□□□□ -0.2
TCOF1-207ENST00000504761 RMND5BQ96G75 393 aaPredicted RBP13.82□□□□□ -0.2
TCOF1-207ENST00000504761 ZNF514Q96K75 400 aaPredicted RBP13.82□□□□□ -0.2
TCOF1-207ENST00000504761 SLC32A1Q9H598 525 aa13.82□□□□□ -0.2
TCOF1-207ENST00000504761 ARSAP15289 507 aa13.81□□□□□ -0.2
TCOF1-207ENST00000504761 GCAP28676 217 aa13.81□□□□□ -0.2
TCOF1-207ENST00000504761 DIO3P55073 304 aa13.81□□□□□ -0.2
TCOF1-207ENST00000504761 SLBPQ14493 270 aaKnown RBP eCLIP13.81□□□□□ -0.2
TCOF1-207ENST00000504761 ADHFE1Q8IWW8 467 aa13.81□□□□□ -0.2
TCOF1-207ENST00000504761 ZCCHC10Q8TBK6 192 aa13.81□□□□□ -0.2
TCOF1-207ENST00000504761 XAGE5Q8WWM1 108 aa13.81□□□□□ -0.2
TCOF1-207ENST00000504761 USP7Q93009 1102 aa13.81□□□□□ -0.2
TCOF1-207ENST00000504761 NACC2Q96BF6 587 aa13.81□□□□□ -0.2
TCOF1-207ENST00000504761 LMLNQ96KR4 655 aa13.81□□□□□ -0.2
TCOF1-207ENST00000504761 ALG2Q9H553 416 aa13.81□□□□□ -0.2
TCOF1-207ENST00000504761 VPS4AQ9UN37 437 aa13.81□□□□□ -0.2
TCOF1-207ENST00000504761 LRRC37AA6NMS7 1700 aa13.81□□□□□ -0.2
TCOF1-207ENST00000504761 WASH3PC4AMC7 463 aa13.81□□□□□ -0.2
TCOF1-207ENST00000504761 PI15O43692 258 aa13.81□□□□□ -0.2
TCOF1-207ENST00000504761 RB1P06400 928 aa13.81□□□□□ -0.2
TCOF1-207ENST00000504761 HSMCR30P0CW71 290 aa13.81□□□□□ -0.2
TCOF1-207ENST00000504761 GPAT3Q53EU6 434 aa13.81□□□□□ -0.2
TCOF1-207ENST00000504761 ZC3H12BQ5HYM0 836 aaKnown RBP13.81□□□□□ -0.2
TCOF1-207ENST00000504761 ZNF534Q76KX8 674 aa13.81□□□□□ -0.2
TCOF1-207ENST00000504761 ARRDC2Q8TBH0 407 aa13.81□□□□□ -0.2
TCOF1-207ENST00000504761 MAP4K5Q9Y4K4 846 aa13.81□□□□□ -0.2
TCOF1-207ENST00000504761 ATXN2Q99700 1313 aaKnown RBP13.81□□□□□ -0.2
TCOF1-207ENST00000504761 HNRNPRO43390 633 aaKnown RBP13.81□□□□□ -0.2
TCOF1-207ENST00000504761 PGM3O95394 542 aa13.81□□□□□ -0.2
TCOF1-207ENST00000504761 CCR4P51679 360 aa13.81□□□□□ -0.2
TCOF1-207ENST00000504761 MAPK12P53778 367 aa13.81□□□□□ -0.2
TCOF1-207ENST00000504761 ERVK-8P63133 956 aa13.81□□□□□ -0.2
TCOF1-207ENST00000504761 RGS1Q08116 209 aa13.81□□□□□ -0.2
TCOF1-207ENST00000504761 TRIM71Q2Q1W2 868 aaKnown RBP13.81□□□□□ -0.2
TCOF1-207ENST00000504761 C9orf64Q5T6V5 341 aa13.81□□□□□ -0.2
TCOF1-207ENST00000504761 R3HCC1LQ7Z5L2 792 aaKnown RBP13.81□□□□□ -0.2
TCOF1-207ENST00000504761 NUSAP1Q9BXS6 441 aaKnown RBP13.81□□□□□ -0.2
TCOF1-207ENST00000504761 KLHL25Q9H0H3 589 aa13.81□□□□□ -0.2
TCOF1-207ENST00000504761 CXorf56Q9H5V9 222 aa13.81□□□□□ -0.2
TCOF1-207ENST00000504761 FBXW2Q9UKT8 454 aa13.81□□□□□ -0.2
TCOF1-207ENST00000504761 INTS11Q5TA45 600 aaKnown RBP13.8□□□□□ -0.2
TCOF1-207ENST00000504761 ZNF776Q68DI1 518 aaPredicted RBP13.8□□□□□ -0.2
TCOF1-207ENST00000504761 AGTRAPQ6RW13 159 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 CYP4V2Q6ZWL3 525 aaPredicted RBP13.8□□□□□ -0.2
TCOF1-207ENST00000504761 MDGA1Q8NFP4 955 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 NRXN2Q9P2S2 1712 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 RAPGEFL1Q9UHV5 662 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 NPIPB15A6NHN6 443 aaPredicted RBP13.8□□□□□ -0.2
TCOF1-207ENST00000504761 OR10H2O60403 315 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 DNAJA2O60884 412 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 IRS1P35568 1242 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 MEF2AQ02078 507 aaPredicted RBP13.8□□□□□ -0.2
TCOF1-207ENST00000504761 RUNX3Q13761 415 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 ERN2Q76MJ5 926 aaKnown RBP13.8□□□□□ -0.2
TCOF1-207ENST00000504761 LRRTM4Q86VH4 590 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 WDR60Q8WVS4 1066 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 POLMQ9NP87 494 aaPredicted RBP13.8□□□□□ -0.2
TCOF1-207ENST00000504761 IL26Q9NPH9 171 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 SH3GLB1Q9Y371 365 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 M0R3G1 203 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 XRCC1P18887 633 aaPredicted RBP13.8□□□□□ -0.2
TCOF1-207ENST00000504761 SLC6A2P23975 617 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 HLA-FP30511 346 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 MAGEA6P43360 314 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 UFM1P61960 85 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 RPS7P62081 194 aaKnown RBP13.8□□□□□ -0.2
TCOF1-207ENST00000504761 ARF5P84085 180 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 ELAVL3Q14576 367 aaKnown RBP13.8□□□□□ -0.2
TCOF1-207ENST00000504761 CRTC1Q6UUV9 634 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 SLC13A3Q8WWT9 602 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 FGF13Q92913 245 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 CEP295NLQ96MC4 621 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 NR1H4Q96RI1 486 aaPredicted RBP13.8□□□□□ -0.2
TCOF1-207ENST00000504761 FAM220BPB1ANY3 271 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 SLC26A3P40879 764 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 CENPAP49450 140 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 SEMA3AQ14563 771 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 OR4D1Q15615 310 aa13.8□□□□□ -0.2
TCOF1-207ENST00000504761 TJAP1Q5JTD0 557 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms