RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ZNF717Q9BY31 904 aaPredicted RBP10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 FAM124BQ9H5Z6 455 aaPredicted RBP10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CFAP20Q9Y6A4 193 aaKnown RBP10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 USP3Q9Y6I4 520 aa10.57□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 HMX2A2RU54 273 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CCDC85CA6NKD9 419 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 EI24O14681 340 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 NRP2O60462 931 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 NOS1APO75052 506 aaPredicted RBP10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 FAM20BO75063 409 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 PRKD3O94806 890 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CPSF4O95639 269 aaKnown RBP10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 JUNP05412 331 aaKnown RBP10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 MSH3P20585 1137 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CD70P32970 193 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 HCAR3P49019 387 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 LRRC74AQ0VAA2 488 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 NFATC3Q12968 1075 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 C18orf21Q32NC0 220 aaPredicted RBP10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 MBLAC2Q68D91 279 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 FAM45BPQ6NSW5 357 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CNKSR3Q6P9H4 555 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RAVER1Q8IY67 606 aaKnown RBP10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 LMNTD1Q8N9Z9 388 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 FAM45AQ8TCE6 357 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ELOVL6Q9H5J4 265 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 EIF2B3Q9NR50 452 aaKnown RBP10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CABIN1Q9Y6J0 2220 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TNFRSF10BO14763 440 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 EPN2O95208 641 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CRYZL1O95825 349 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 FAM163BP0C2L3 166 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SLC7A1P30825 629 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RCVRNP35243 200 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 PPM1AP35813 382 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CAPGP40121 348 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RPL38P63173 70 aaKnown RBP10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 FRG1Q14331 258 aaKnown RBP10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TAZQ16635 292 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 C2orf27AQ580R0 203 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 UBE2UQ5VVX9 321 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SPRED2Q7Z698 418 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 IGFN1Q86VF2 1251 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TMEM126BQ8IUX1 230 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 GALNT12Q8IXK2 581 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 PNPT1Q8TCS8 783 aaKnown RBP10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TSEN34Q9BSV6 310 aaKnown RBP10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 BOCQ9BWV1 1114 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ZNF334Q9HCZ1 680 aaPredicted RBP10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 PNPLA8Q9NP80 782 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SPASTQ9UBP0 616 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CCL26Q9Y258 94 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SNX8Q9Y5X2 465 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RAD54BQ9Y620 910 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 HTTP42858 3142 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 A8MT66 165 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 PRMT5O14744 637 aaPredicted RBP10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 GUCY1B2O75343 617 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 EPCAMP16422 314 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 EN2P19622 333 aaPredicted RBP10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 GABRB3P28472 473 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SCAPQ12770 1279 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 IRF5Q13568 498 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 LRRC26Q2I0M4 334 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RAET1GQ6H3X3 334 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 AFTPHQ6ULP2 937 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TP63Q9H3D4 680 aaPredicted RBP10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 INIPQ9NRY2 104 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TMEM248Q9NWD8 314 aa10.56□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 GLYATL1P3A0A0U1RQE8 302 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CAPN14A8MX76 684 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 BHMG1C9JSJ3 638 aaPredicted RBP10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 H3BMQ9 156 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 PRAMEF11O60813 436 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 XYLBO75191 536 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 BCAS2O75934 225 aaPredicted RBP10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ATE1O95260 518 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 HK2P52789 917 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 PPP1R8Q12972 351 aaKnown RBP10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SETMARQ53H47 684 aaPredicted RBP10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ZNF544Q6NX49 715 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ZCCHC8Q6NZY4 707 aaKnown RBP10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 PRMT9Q6P2P2 845 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 THAP5Q7Z6K1 395 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 RALGPS2Q86X27 583 aaPredicted RBP10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CILP2Q8IUL8 1156 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ALDH16A1Q8IZ83 802 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 ENKURQ8TC29 256 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 WFDC5Q8TCV5 224 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 IMP4Q96G21 291 aaKnown RBP10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CENPNQ96H22 339 aaPredicted RBP10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 PPM1MQ96MI6 270 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 COG8Q96MW5 612 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 TSSK3Q96PN8 268 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 CGREF1Q99674 301 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 FEM1AQ9BSK4 669 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SIAEQ9HAT2 523 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SIRPGQ9P1W8 387 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 GNG14A0A1W2PPG7 69 aa10.55□□□□□ -0.72
MSH5-SAPCD1-207ENST00000493662 SAGE2PA6NJ88 616 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms