RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 FOPNLQ96NB1 174 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 FERD3LQ96RJ6 166 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 SLC32A1Q9H598 525 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 ZNF446Q9NWS9 450 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 NLGN3Q9NZ94 848 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 CIDEBQ9UHD4 219 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 ASF1AQ9Y294 204 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 BTBD3Q9Y2F9 522 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 ZFYVE26Q68DK2 2539 aa16.78■□□□□ 0.28
LIME1-208ENST00000493265 ZFC3H1O60293 1989 aaKnown RBP16.78■□□□□ 0.28
LIME1-208ENST00000493265 NPEPPSL1A6NEC2 478 aa16.77■□□□□ 0.28
LIME1-208ENST00000493265 PCNX2A6NKB5 2137 aa16.77■□□□□ 0.28
LIME1-208ENST00000493265 BTN3A1O00481 513 aa16.77■□□□□ 0.28
LIME1-208ENST00000493265 SIGLEC6O43699 453 aa16.77■□□□□ 0.28
LIME1-208ENST00000493265 SASH3O75995 380 aa16.77■□□□□ 0.28
LIME1-208ENST00000493265 TSPAN12O95859 305 aa16.77■□□□□ 0.28
LIME1-208ENST00000493265 ZNF883P0CG24 379 aa16.77■□□□□ 0.28
LIME1-208ENST00000493265 GIMD1P0DJR0 217 aa16.77■□□□□ 0.28
LIME1-208ENST00000493265 MTHFD1P11586 935 aaKnown RBP16.77■□□□□ 0.28
LIME1-208ENST00000493265 ENO3P13929 434 aaPredicted RBP16.77■□□□□ 0.28
LIME1-208ENST00000493265 SLC2A4P14672 509 aa16.77■□□□□ 0.28
LIME1-208ENST00000493265 ATP5DP30049 168 aa16.77■□□□□ 0.28
LIME1-208ENST00000493265 BDKRB1P46663 353 aa16.77■□□□□ 0.28
LIME1-208ENST00000493265 DLG1Q12959 904 aa16.77■□□□□ 0.28
LIME1-208ENST00000493265 DNAJC3Q13217 504 aa16.77■□□□□ 0.28
LIME1-208ENST00000493265 PRKG2Q13237 762 aa16.77■□□□□ 0.28
LIME1-208ENST00000493265 C6orf132Q5T0Z8 1188 aa16.77■□□□□ 0.28
LIME1-208ENST00000493265 CAPRIN2Q6IMN6 1127 aaKnown RBP16.77■□□□□ 0.28
LIME1-208ENST00000493265 WASH2PQ6VEQ5 465 aa16.77■□□□□ 0.28
LIME1-208ENST00000493265 CROCCP2Q86T23 111 aa16.77■□□□□ 0.28
LIME1-208ENST00000493265 SRRM1Q8IYB3 904 aaKnown RBP16.77■□□□□ 0.28
LIME1-208ENST00000493265 C4orf33Q8N1A6 199 aa16.77■□□□□ 0.28
LIME1-208ENST00000493265 OR4C6Q8NH72 309 aa16.77■□□□□ 0.28
LIME1-208ENST00000493265 MAPK15Q8TD08 544 aa16.77■□□□□ 0.28
LIME1-208ENST00000493265 SLC37A2Q8TED4 501 aa16.77■□□□□ 0.28
LIME1-208ENST00000493265 ZCCHC14Q8WYQ9 949 aaKnown RBP16.77■□□□□ 0.28
LIME1-208ENST00000493265 NXNL1Q96CM4 212 aa16.77■□□□□ 0.28
LIME1-208ENST00000493265 WASH6PQ9NQA3 447 aa16.77■□□□□ 0.28
LIME1-208ENST00000493265 ZNF624Q9P2J8 865 aaPredicted RBP16.77■□□□□ 0.28
LIME1-208ENST00000493265 IKZF3Q9UKT9 509 aa16.77■□□□□ 0.28
LIME1-208ENST00000493265 PCOLCE2Q9UKZ9 415 aa16.77■□□□□ 0.28
LIME1-208ENST00000493265 TDRKHQ9Y2W6 561 aaKnown RBP16.77■□□□□ 0.28
LIME1-208ENST00000493265 TMEM8BA6NDV4 472 aa16.76■□□□□ 0.27
LIME1-208ENST00000493265 CDC7O00311 574 aa16.76■□□□□ 0.27
LIME1-208ENST00000493265 DYNC1I1O14576 645 aa16.76■□□□□ 0.27
LIME1-208ENST00000493265 NOBOXO60393 691 aa16.76■□□□□ 0.27
LIME1-208ENST00000493265 WISP3O95389 354 aaPredicted RBP16.76■□□□□ 0.27
LIME1-208ENST00000493265 VIPP01282 170 aa16.76■□□□□ 0.27
LIME1-208ENST00000493265 LTA4HP09960 611 aaKnown RBP16.76■□□□□ 0.27
LIME1-208ENST00000493265 MPC1LP0DKB6 136 aa16.76■□□□□ 0.27
LIME1-208ENST00000493265 ACADLP28330 430 aa16.76■□□□□ 0.27
LIME1-208ENST00000493265 SLC19A1P41440 591 aa16.76■□□□□ 0.27
LIME1-208ENST00000493265 MAGEA12P43365 314 aa16.76■□□□□ 0.27
LIME1-208ENST00000493265 GLRBP48167 497 aa16.76■□□□□ 0.27
LIME1-208ENST00000493265 SIM1P81133 766 aaPredicted RBP16.76■□□□□ 0.27
LIME1-208ENST00000493265 CYHR1Q6ZMK1 362 aa16.76■□□□□ 0.27
LIME1-208ENST00000493265 UBE2R2Q712K3 238 aaPredicted RBP16.76■□□□□ 0.27
LIME1-208ENST00000493265 ZNF761Q86XN6 746 aaPredicted RBP16.76■□□□□ 0.27
LIME1-208ENST00000493265 SLC35F3Q8IY50 421 aa16.76■□□□□ 0.27
LIME1-208ENST00000493265 OR5AR1Q8NGP9 310 aa16.76■□□□□ 0.27
LIME1-208ENST00000493265 RHBDD1Q8TEB9 315 aa16.76■□□□□ 0.27
LIME1-208ENST00000493265 JPH3Q8WXH2 748 aaPredicted RBP16.76■□□□□ 0.27
LIME1-208ENST00000493265 ISL2Q96A47 359 aa16.76■□□□□ 0.27
LIME1-208ENST00000493265 SCYL1Q96KG9 808 aa16.76■□□□□ 0.27
LIME1-208ENST00000493265 TSNARE1Q96NA8 513 aa16.76■□□□□ 0.27
LIME1-208ENST00000493265 HGH1Q9BTY7 390 aa16.76■□□□□ 0.27
LIME1-208ENST00000493265 DUSP23Q9BVJ7 150 aa16.76■□□□□ 0.27
LIME1-208ENST00000493265 VIPAS39Q9H9C1 493 aa16.76■□□□□ 0.27
LIME1-208ENST00000493265 IGSF5Q9NSI5 407 aa16.76■□□□□ 0.27
LIME1-208ENST00000493265 ZNF358Q9NW07 568 aa16.76■□□□□ 0.27
LIME1-208ENST00000493265 ADAMTS6Q9UKP5 1117 aa16.76■□□□□ 0.27
LIME1-208ENST00000493265 KLK13Q9UKR3 277 aa16.76■□□□□ 0.27
LIME1-208ENST00000493265 PCDHGB2Q9Y5G2 931 aa16.76■□□□□ 0.27
LIME1-208ENST00000493265 PKD1L2Q7Z442 2459 aa16.75■□□□□ 0.27
LIME1-208ENST00000493265 BAHCC1Q9P281 2608 aa16.75■□□□□ 0.27
LIME1-208ENST00000493265 KIR2DS5A0A0G2JLQ3 304 aa16.75■□□□□ 0.27
LIME1-208ENST00000493265 A0A0G2JNG1 304 aa16.75■□□□□ 0.27
LIME1-208ENST00000493265 KRT87PA6NCN2 255 aa16.75■□□□□ 0.27
LIME1-208ENST00000493265 OR5K4A6NMS3 321 aa16.75■□□□□ 0.27
LIME1-208ENST00000493265 SRRM3A6NNA2 597 aaPredicted RBP16.75■□□□□ 0.27
LIME1-208ENST00000493265 KIR2DS3K7RE56 304 aa16.75■□□□□ 0.27
LIME1-208ENST00000493265 AGPSO00116 658 aa16.75■□□□□ 0.27
LIME1-208ENST00000493265 EIF3FO00303 357 aaPredicted RBP16.75■□□□□ 0.27
LIME1-208ENST00000493265 ZBTB14O43829 449 aa16.75■□□□□ 0.27
LIME1-208ENST00000493265 SH3BP5O60239 455 aa16.75■□□□□ 0.27
LIME1-208ENST00000493265 SYF2O95926 243 aaKnown RBP16.75■□□□□ 0.27
LIME1-208ENST00000493265 CD59P13987 128 aa16.75■□□□□ 0.27
LIME1-208ENST00000493265 HOXB3P14651 431 aaPredicted RBP16.75■□□□□ 0.27
LIME1-208ENST00000493265 KRT4P19013 534 aa16.75■□□□□ 0.27
LIME1-208ENST00000493265 GRK6P43250 576 aa16.75■□□□□ 0.27
LIME1-208ENST00000493265 CSRP3P50461 194 aa16.75■□□□□ 0.27
LIME1-208ENST00000493265 KIR2DS5Q14953 304 aa16.75■□□□□ 0.27
LIME1-208ENST00000493265 TSNQ15631 228 aaKnown RBP16.75■□□□□ 0.27
LIME1-208ENST00000493265 FAM83EQ2M2I3 478 aa16.75■□□□□ 0.27
LIME1-208ENST00000493265 INAVAQ3KP66 663 aa16.75■□□□□ 0.27
LIME1-208ENST00000493265 C14orf28Q4W4Y0 310 aa16.75■□□□□ 0.27
LIME1-208ENST00000493265 LRRC8EQ6NSJ5 796 aa16.75■□□□□ 0.27
LIME1-208ENST00000493265 ZCCHC8Q6NZY4 707 aaKnown RBP16.75■□□□□ 0.27
LIME1-208ENST00000493265 NEK10Q6ZWH5 1172 aa16.75■□□□□ 0.27
LIME1-208ENST00000493265 SLC9B2Q86UD5 537 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms