RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 KANK2Q63ZY3 851 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 Q6ZS52 159 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 DET1Q7L5Y6 550 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 ARPINQ7Z6K5 226 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 DSG4Q86SJ6 1040 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 NRSN1Q8IZ57 195 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 AFAP1L2Q8N4X5 818 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 PDPRQ8NCN5 879 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 DDHD1Q8NEL9 900 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 MAFAQ8NHW3 353 aaPredicted RBP11.91□□□□□ -0.5
HDAC6-230ENST00000488543 DLG3Q92796 817 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 ESAMQ96AP7 390 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 NMD3Q96D46 503 aaKnown RBP11.91□□□□□ -0.5
HDAC6-230ENST00000488543 CNBD2Q96M20 576 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 SH3GL3Q99963 347 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 ZSCAN5AQ9BUG6 496 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 EIF2B4Q9UI10 523 aaKnown RBP11.91□□□□□ -0.5
HDAC6-230ENST00000488543 OARD1Q9Y530 152 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 C1QTNF3-AMACRE9PGA6 284 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 H0Y858 1186 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 E2F3O00716 465 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 OR56A5P0C7T3 313 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 TAS2R38P59533 333 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 ACOX1Q15067 660 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 CRY1Q16526 586 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 PHKG1Q16816 387 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 C6orf52Q5T4I8 152 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 PIP5KL1Q5T9C9 394 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 TMEM92Q6UXU6 159 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 BNC2Q6ZN30 1099 aaPredicted RBP11.91□□□□□ -0.5
HDAC6-230ENST00000488543 CHSY3Q70JA7 882 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 ADGRG6Q86SQ4 1221 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 CLYBLQ8N0X4 340 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 PQLC1Q8N2U9 271 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 KYQ8NBH2 561 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 FLCNQ8NFG4 579 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 DTD2Q96FN9 168 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 PPP1R16AQ96I34 528 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 SLC45A3Q96JT2 553 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 KCNA7Q96RP8 456 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 GABRG3Q99928 467 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 OCEL1Q9H607 264 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 SEMA4BQ9NPR2 832 aaPredicted RBP11.91□□□□□ -0.5
HDAC6-230ENST00000488543 CD93Q9NPY3 652 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 ZNF225Q9UK10 706 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 DOCK9Q9BZ29 2069 aa11.91□□□□□ -0.5
HDAC6-230ENST00000488543 AZIN1O14977 448 aa11.9□□□□□ -0.5
HDAC6-230ENST00000488543 FFAR2O15552 330 aa11.9□□□□□ -0.5
HDAC6-230ENST00000488543 SNX2O60749 519 aa11.9□□□□□ -0.5
HDAC6-230ENST00000488543 RNASEH2AO75792 299 aaKnown RBP11.9□□□□□ -0.5
HDAC6-230ENST00000488543 CBSLP0DN79 551 aa11.9□□□□□ -0.5
HDAC6-230ENST00000488543 ATP6V1B1P15313 513 aa11.9□□□□□ -0.5
HDAC6-230ENST00000488543 PRDX6P30041 224 aa11.9□□□□□ -0.5
HDAC6-230ENST00000488543 AKT1P31749 480 aa11.9□□□□□ -0.5
HDAC6-230ENST00000488543 CBSP35520 551 aa11.9□□□□□ -0.5
HDAC6-230ENST00000488543 RPS14P62263 151 aaKnown RBP11.9□□□□□ -0.5
HDAC6-230ENST00000488543 CYLC2Q14093 348 aaPredicted RBP11.9□□□□□ -0.5
HDAC6-230ENST00000488543 ZNF423Q2M1K9 1284 aa11.9□□□□□ -0.5
HDAC6-230ENST00000488543 TTLL9Q3SXZ7 439 aa11.9□□□□□ -0.5
HDAC6-230ENST00000488543 SDE2Q6IQ49 451 aa11.9□□□□□ -0.5
HDAC6-230ENST00000488543 UGT2A3Q6UWM9 527 aa11.9□□□□□ -0.5
HDAC6-230ENST00000488543 SYVN1Q86TM6 617 aa11.9□□□□□ -0.5
HDAC6-230ENST00000488543 ST13P4Q8IZP2 240 aaPredicted RBP11.9□□□□□ -0.5
HDAC6-230ENST00000488543 HDDC3Q8N4P3 179 aa11.9□□□□□ -0.5
HDAC6-230ENST00000488543 ICA1LQ8NDH6 482 aa11.9□□□□□ -0.5
HDAC6-230ENST00000488543 BTN2A2Q8WVV5 523 aa11.9□□□□□ -0.5
HDAC6-230ENST00000488543 JADE3Q92613 823 aa11.9□□□□□ -0.5
HDAC6-230ENST00000488543 C3orf30Q96M34 536 aa11.9□□□□□ -0.5
HDAC6-230ENST00000488543 VPS35Q96QK1 796 aa11.9□□□□□ -0.5
HDAC6-230ENST00000488543 PKP2Q99959 881 aa11.9□□□□□ -0.5
HDAC6-230ENST00000488543 FAM126AQ9BYI3 521 aaPredicted RBP11.9□□□□□ -0.5
HDAC6-230ENST00000488543 SEMA6AQ9H2E6 1030 aa11.9□□□□□ -0.5
HDAC6-230ENST00000488543 WDR41Q9HAD4 459 aa11.9□□□□□ -0.5
HDAC6-230ENST00000488543 SLC2A4RGQ9NR83 387 aa11.9□□□□□ -0.5
HDAC6-230ENST00000488543 C2orf42Q9NWW7 574 aa11.9□□□□□ -0.5
HDAC6-230ENST00000488543 DNAJC15Q9Y5T4 150 aa11.9□□□□□ -0.5
HDAC6-230ENST00000488543 COPG1Q9Y678 874 aaKnown RBP11.9□□□□□ -0.5
HDAC6-230ENST00000488543 K7ESM1 405 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 WNT9AO14904 365 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 TAPBPO15533 448 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 SOD1P00441 154 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 SMIM18P0DKX4 95 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 PRDX3P30048 256 aaKnown RBP11.89□□□□□ -0.51
HDAC6-230ENST00000488543 NAA20P61599 178 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 CDKL1Q00532 357 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 BIRC2Q13490 618 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 PCBP2Q15366 365 aaKnown RBP eCLIP11.89□□□□□ -0.51
HDAC6-230ENST00000488543 ZNF284Q2VY69 593 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 TMEM52BQ4KMG9 183 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 TMEM31Q5JXX7 168 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 AGBL4Q5VU57 503 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 LAYNQ6UX15 382 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 FRA10AC1Q70Z53 315 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 CYP2U1Q7Z449 544 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 OR2T3Q8NH03 318 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 CEP70Q8NHQ1 597 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 FAM110BQ8TC76 370 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 AP2M1Q96CW1 435 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 PCDHAC1Q9H158 963 aa11.89□□□□□ -0.51
HDAC6-230ENST00000488543 TUBB1Q9H4B7 451 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms