RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 DMPKQ09013 629 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 TRA2AQ13595 282 aaKnown RBP eCLIP7.85□□□□□ -1.15
USP40-216ENST00000485943 GPR18Q14330 331 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 RPE65Q16518 533 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 KCTD19Q17RG1 926 aaPredicted RBP7.85□□□□□ -1.15
USP40-216ENST00000485943 CACHD1Q5VU97 1274 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 METRNLQ641Q3 311 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 TMEM71Q6P5X7 295 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 ABRAXAS1Q6UWZ7 409 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 LDB1Q86U70 411 aaPredicted RBP7.85□□□□□ -1.15
USP40-216ENST00000485943 ZNF547Q8IVP9 402 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 CTAGE3PQ8IX95 158 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 GPATCH11Q8N954 259 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 NAT8LQ8N9F0 302 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 SIDT2Q8NBJ9 832 aaKnown RBP7.85□□□□□ -1.15
USP40-216ENST00000485943 ACVR1CQ8NER5 493 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 OR4D9Q8NGE8 314 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 NAT14Q8WUY8 206 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 IFT81Q8WYA0 676 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 TFGQ92734 400 aaPredicted RBP7.85□□□□□ -1.15
USP40-216ENST00000485943 SLCO2A1Q92959 643 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 FAM136AQ96C01 138 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 NAF1Q96HR8 494 aaKnown RBP7.85□□□□□ -1.15
USP40-216ENST00000485943 VPS39Q96JC1 886 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 LINC00615Q96LM1 132 aaPredicted RBP7.85□□□□□ -1.15
USP40-216ENST00000485943 CCDC74BQ96LY2 380 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 ZNF778Q96MU6 729 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 ERP44Q9BS26 406 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 RAB11FIP5Q9BXF6 653 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 TBC1D10AQ9BXI6 508 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 TSPYL1Q9H0U9 437 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 CAAP1Q9H8G2 361 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 SAYSD1Q9NPB0 183 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 HRASLS2Q9NWW9 162 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 SLC23A2Q9UGH3 650 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 LNPEPQ9UIQ6 1025 aa7.85□□□□□ -1.15
USP40-216ENST00000485943 TRMT6Q9UJA5 497 aaKnown RBP7.85□□□□□ -1.15
USP40-216ENST00000485943 TRBV5-4A0A0C4DH59 114 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 FAM221BA6H8Z2 402 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 OR6C74A6NCV1 312 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 FIGNL2A6NMB9 653 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 EFCAB7A8K855 629 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 ISM1B1AKI9 464 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 C1QTNF9BB2RNN3 333 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 GAPDHSO14556 408 aaPredicted RBP7.84□□□□□ -1.15
USP40-216ENST00000485943 HGSO14964 777 aaPredicted RBP7.84□□□□□ -1.15
USP40-216ENST00000485943 RAD51CO43502 376 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 OR1I1O60431 355 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 BRINP1O60477 761 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 SEC31AO94979 1220 aaKnown RBP7.84□□□□□ -1.15
USP40-216ENST00000485943 CATP04040 527 aaKnown RBP7.84□□□□□ -1.15
USP40-216ENST00000485943 HIST1H2AGP0C0S8 130 aaPredicted RBP7.84□□□□□ -1.15
USP40-216ENST00000485943 C1QTNF9P0C862 333 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 GIMD1P0DJR0 217 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 PKMP14618 531 aaKnown RBP7.84□□□□□ -1.15
USP40-216ENST00000485943 HIST1H2ADP20671 130 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 MSX1P28360 303 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 SHMT2P34897 504 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 ELK3P41970 407 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 MAGEA6P43360 314 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 CD151P48509 253 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 CARSP49589 748 aaKnown RBP7.84□□□□□ -1.15
USP40-216ENST00000485943 MRPS25P82663 173 aaKnown RBP7.84□□□□□ -1.15
USP40-216ENST00000485943 GUCY2DQ02846 1103 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 ILF2Q12905 390 aaKnown RBP7.84□□□□□ -1.15
USP40-216ENST00000485943 ABRQ12979 859 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 PRKG2Q13237 762 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 CRYMQ14894 314 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 CLCA4Q14CN2 919 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 HSP90AA5PQ58FG0 334 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 DCAF12Q5T6F0 453 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 THEMIS2Q5TEJ8 643 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 LRRC8EQ6NSJ5 796 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 DUS1LQ6P1R4 473 aaKnown RBP7.84□□□□□ -1.15
USP40-216ENST00000485943 CNSTQ6PJW8 725 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 CEACAM20Q6UY09 585 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 FAM92BQ6ZTR7 304 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 PDZD3Q86UT5 571 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 CAND1Q86VP6 1230 aaKnown RBP7.84□□□□□ -1.15
USP40-216ENST00000485943 MARCH9Q86YJ5 346 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 RASGRP3Q8IV61 690 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 PIANPQ8IYJ0 282 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 KRT222Q8N1A0 295 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 CACTIN-AS1Q8N1I8 211 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 ZBTB2Q8N680 514 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 DCBLD1Q8N8Z6 715 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 ZSCAN1Q8NBB4 408 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 RCBTB1Q8NDN9 531 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 FBXO36Q8NEA4 188 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 OR4E2Q8NGC2 313 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 MDM1Q8TC05 714 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 ZFPM2Q8WW38 1151 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 KIAA1143Q96AT1 154 aaPredicted RBP7.84□□□□□ -1.15
USP40-216ENST00000485943 SLC22A18Q96BI1 424 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 LIN37Q96GY3 246 aaPredicted RBP7.84□□□□□ -1.15
USP40-216ENST00000485943 PRR11Q96HE9 360 aaPredicted RBP7.84□□□□□ -1.15
USP40-216ENST00000485943 HIST1H2AHQ96KK5 128 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 DMRTB1Q96MA1 342 aa7.84□□□□□ -1.15
USP40-216ENST00000485943 ZNF578Q96N58 590 aaPredicted RBP7.84□□□□□ -1.15
USP40-216ENST00000485943 EBNA1BP2Q99848 306 aaKnown RBP7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms