RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 CD82P27701 267 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 RBL1P28749 1068 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 CSF2RBP32927 897 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 PTPN7P35236 360 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 ETV5P41161 510 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 PPM1FP49593 454 aaPredicted RBP6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 CLCNKAP51800 687 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 VAV2P52735 878 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 LIMK2P53671 638 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 MAPK10P53779 464 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 GEMP55040 296 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 RWDD2BP57060 319 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 RHDQ02161 417 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 NFATC2Q13469 925 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 GTF2H3Q13889 308 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 COL9A2Q14055 689 aaPredicted RBP6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 C16orf72Q14CZ0 275 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 INSCQ1MX18 579 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 SIRPB2Q5JXA9 342 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 CHCHD2P9Q5T1J5 151 aaPredicted RBP6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 NKAIN2Q5VXU1 208 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 ITPRIPL1Q6GPH6 555 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 RAD9BQ6WBX8 426 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 CCDC81Q6ZN84 652 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 GLT6D1Q7Z4J2 308 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 KIAA1328Q86T90 577 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 LRRTM4Q86VH4 590 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 CDKL3Q8IVW4 592 aaPredicted RBP6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 TXLNBQ8N3L3 684 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 SLC25A41Q8N5S1 370 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 ZNF655Q8N720 491 aaPredicted RBP6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 LSM14AQ8ND56 463 aaKnown RBP6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 RCBTB1Q8NDN9 531 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 PHC3Q8NDX5 983 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 CCDC112Q8NEF3 446 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 IPMKQ8NFU5 416 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 BRSK1Q8TDC3 778 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 BLOC1S5Q8TDH9 187 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 SNRNP27Q8WVK2 155 aaKnown RBP6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 USP7Q93009 1102 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 OXNAD1Q96HP4 312 aaPredicted RBP6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 BBC3Q96PG8 261 aaPredicted RBP6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 VPS35Q96QK1 796 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 CCNL2Q96S94 520 aaPredicted RBP6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 BAG1Q99933 345 aaPredicted RBP6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 TIMM29Q9BSF4 260 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 LDHAL6BQ9BYZ2 381 aaPredicted RBP6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 OSBPL8Q9BZF1 889 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 GBA3Q9H227 469 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 OSGEPL1Q9H4B0 414 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 EPB41L1Q9H4G0 881 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 BPIFA1Q9NP55 256 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 ARFGAP3Q9NP61 516 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 TNFRSF12AQ9NP84 129 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 KLC4Q9NSK0 619 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 REV1Q9UBZ9 1251 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 REXO2Q9Y3B8 237 aaKnown RBP6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 PKP3Q9Y446 797 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 SPO11Q9Y5K1 396 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 DUSP10Q9Y6W6 482 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 PIKFYVEQ9Y2I7 2098 aa6.69□□□□□ -1.34
CCDC88A-213ENST00000476903 GRID2IPA4D2P6 1211 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 A6NCN8 305 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 K7ENP7 123 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 MTX2O75431 263 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 CDK14O94921 469 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 PTMAP06454 111 aaKnown RBP6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 CCL4P13236 92 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 ZNF7P17097 686 aaPredicted RBP6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 VCLP18206 1134 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 CSTF2P33240 577 aaKnown RBP eCLIP6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 SPAM1P38567 509 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 EIF3EP60228 445 aaKnown RBP6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 OTUD4Q01804 1114 aaKnown RBP6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 CFHR1Q03591 330 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 ITGA9Q13797 1035 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 PRPSAP1Q14558 356 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 ATP13A5Q4VNC0 1218 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 LDLRAP1Q5SW96 308 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 TMEM71Q6P5X7 295 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 DARS2Q6PI48 645 aaKnown RBP6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 INO80CQ6PI98 192 aaPredicted RBP6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 WDR74Q6RFH5 385 aaPredicted RBP6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 BNC2Q6ZN30 1099 aaPredicted RBP6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 ZNF761Q86XN6 746 aaPredicted RBP6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 TRAPPC5Q8IUR0 188 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 TRIM48Q8IWZ4 208 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 SYCE1Q8N0S2 351 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 TTC30BQ8N4P2 665 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 UBL4BQ8N7F7 174 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 LRRC57Q8N9N7 239 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 ACRBPQ8NEB7 543 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 GDAP1Q8TB36 358 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 ACTL9Q8TC94 416 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 DTX3LQ8TDB6 740 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 LRRC45Q96CN5 670 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 TTC25Q96NG3 672 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 PPP1R2P1Q96PQ5 205 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 TAAR9Q96RI9 348 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 IL26Q9NPH9 171 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms