RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 BRD3Q15059 726 aa18■□□□□ 0.47
COL7A1-209ENST00000474432 PPP1R21Q6ZMI0 780 aa18■□□□□ 0.47
COL7A1-209ENST00000474432 ATG14Q6ZNE5 492 aa18■□□□□ 0.47
COL7A1-209ENST00000474432 AMIGO1Q86WK6 493 aa18■□□□□ 0.47
COL7A1-209ENST00000474432 PTRH1Q86Y79 214 aaKnown RBP18■□□□□ 0.47
COL7A1-209ENST00000474432 OR8K5Q8NH50 307 aa18■□□□□ 0.47
COL7A1-209ENST00000474432 OR1L3Q8NH93 324 aa18■□□□□ 0.47
COL7A1-209ENST00000474432 LKAAEAR1Q8TD35 194 aa18■□□□□ 0.47
COL7A1-209ENST00000474432 ELMO1Q92556 727 aa18■□□□□ 0.47
COL7A1-209ENST00000474432 ABHD17AQ96GS6 310 aa18■□□□□ 0.47
COL7A1-209ENST00000474432 TRAPPC9Q96Q05 1148 aa18■□□□□ 0.47
COL7A1-209ENST00000474432 ALS2CR12Q96Q35 445 aa18■□□□□ 0.47
COL7A1-209ENST00000474432 ACTL8Q9H568 366 aa18■□□□□ 0.47
COL7A1-209ENST00000474432 LZTFL1Q9NQ48 299 aa18■□□□□ 0.47
COL7A1-209ENST00000474432 PAK5Q9P286 719 aa18■□□□□ 0.47
COL7A1-209ENST00000474432 CDYLQ9Y232 598 aa18■□□□□ 0.47
COL7A1-209ENST00000474432 DRG1Q9Y295 367 aaKnown RBP18■□□□□ 0.47
COL7A1-209ENST00000474432 HEMK1Q9Y5R4 338 aaPredicted RBP18■□□□□ 0.47
COL7A1-209ENST00000474432 MED13Q9UHV7 2174 aa18■□□□□ 0.47
COL7A1-209ENST00000474432 GSAPA4D1B5 854 aa17.99■□□□□ 0.47
COL7A1-209ENST00000474432 K7EM74 188 aa17.99■□□□□ 0.47
COL7A1-209ENST00000474432 FTH1P02794 183 aa17.99■□□□□ 0.47
COL7A1-209ENST00000474432 APRTP07741 180 aa17.99■□□□□ 0.47
COL7A1-209ENST00000474432 MSL3P1P0C860 447 aa17.99■□□□□ 0.47
COL7A1-209ENST00000474432 CCR7P32248 378 aa17.99■□□□□ 0.47
COL7A1-209ENST00000474432 RORAP35398 523 aa17.99■□□□□ 0.47
COL7A1-209ENST00000474432 RPS18P62269 152 aaKnown RBP17.99■□□□□ 0.47
COL7A1-209ENST00000474432 CCZ1BP86790 482 aa17.99■□□□□ 0.47
COL7A1-209ENST00000474432 CCZ1P86791 482 aaPredicted RBP17.99■□□□□ 0.47
COL7A1-209ENST00000474432 PLEKHS1Q5SXH7 462 aa17.99■□□□□ 0.47
COL7A1-209ENST00000474432 TMTC4Q5T4D3 741 aa17.99■□□□□ 0.47
COL7A1-209ENST00000474432 AFTPHQ6ULP2 937 aa17.99■□□□□ 0.47
COL7A1-209ENST00000474432 LRRC8AQ8IWT6 810 aa17.99■□□□□ 0.47
COL7A1-209ENST00000474432 OR4L1Q8NH43 312 aa17.99■□□□□ 0.47
COL7A1-209ENST00000474432 LRFN5Q96NI6 719 aa17.99■□□□□ 0.47
COL7A1-209ENST00000474432 KLHL25Q9H0H3 589 aa17.99■□□□□ 0.47
COL7A1-209ENST00000474432 ZNF71Q9NQZ8 489 aaPredicted RBP17.99■□□□□ 0.47
COL7A1-209ENST00000474432 CHRAC1Q9NRG0 131 aa17.99■□□□□ 0.47
COL7A1-209ENST00000474432 SOHLH2Q9NX45 425 aa17.99■□□□□ 0.47
COL7A1-209ENST00000474432 ACTR10Q9NZ32 417 aa17.99■□□□□ 0.47
COL7A1-209ENST00000474432 MARCH4Q9P2E8 410 aaPredicted RBP17.99■□□□□ 0.47
COL7A1-209ENST00000474432 PCDHB3Q9Y5E6 796 aa17.99■□□□□ 0.47
COL7A1-209ENST00000474432 CDC14CA4D256 554 aa17.98■□□□□ 0.47
COL7A1-209ENST00000474432 GOLGA6L6A8MZA4 724 aa17.98■□□□□ 0.47
COL7A1-209ENST00000474432 E7EVH7 732 aa17.98■□□□□ 0.47
COL7A1-209ENST00000474432 H3BMH7 237 aa17.98■□□□□ 0.47
COL7A1-209ENST00000474432 QSOX1O00391 747 aa17.98■□□□□ 0.47
COL7A1-209ENST00000474432 HCRTR1O43613 425 aa17.98■□□□□ 0.47
COL7A1-209ENST00000474432 CPNE3O75131 537 aaKnown RBP17.98■□□□□ 0.47
COL7A1-209ENST00000474432 CAPN1P07384 714 aa17.98■□□□□ 0.47
COL7A1-209ENST00000474432 KCNJ1P48048 391 aa17.98■□□□□ 0.47
COL7A1-209ENST00000474432 GABRA4P48169 554 aa17.98■□□□□ 0.47
COL7A1-209ENST00000474432 LMAN1P49257 510 aa17.98■□□□□ 0.47
COL7A1-209ENST00000474432 ZIC1Q15915 447 aa17.98■□□□□ 0.47
COL7A1-209ENST00000474432 UNC5AQ6ZN44 842 aa17.98■□□□□ 0.47
COL7A1-209ENST00000474432 LDB1Q86U70 411 aaPredicted RBP17.98■□□□□ 0.47
COL7A1-209ENST00000474432 TMEM126BQ8IUX1 230 aa17.98■□□□□ 0.47
COL7A1-209ENST00000474432 VRK3Q8IV63 474 aa17.98■□□□□ 0.47
COL7A1-209ENST00000474432 C9orf43Q8TAL5 461 aaPredicted RBP17.98■□□□□ 0.47
COL7A1-209ENST00000474432 PEX13Q92968 403 aa17.98■□□□□ 0.47
COL7A1-209ENST00000474432 OR2A14Q96R47 310 aa17.98■□□□□ 0.47
COL7A1-209ENST00000474432 GPR87Q9BY21 358 aa17.98■□□□□ 0.47
COL7A1-209ENST00000474432 CHST8Q9H2A9 424 aa17.98■□□□□ 0.47
COL7A1-209ENST00000474432 FAM60AQ9NP50 221 aa17.98■□□□□ 0.47
COL7A1-209ENST00000474432 EIF2B3Q9NR50 452 aaKnown RBP17.98■□□□□ 0.47
COL7A1-209ENST00000474432 TREX1Q9NSU2 369 aa17.98■□□□□ 0.47
COL7A1-209ENST00000474432 SPHK1Q9NYA1 384 aa17.98■□□□□ 0.47
COL7A1-209ENST00000474432 POLHQ9Y253 713 aa17.98■□□□□ 0.47
COL7A1-209ENST00000474432 NBASA2RRP1 2371 aa17.97■□□□□ 0.47
COL7A1-209ENST00000474432 PIPSLA2A3N6 862 aa17.97■□□□□ 0.47
COL7A1-209ENST00000474432 C2orf74A8MZ97 194 aa17.97■□□□□ 0.47
COL7A1-209ENST00000474432 GPC4O75487 556 aa17.97■□□□□ 0.47
COL7A1-209ENST00000474432 FGGP02679 453 aa17.97■□□□□ 0.47
COL7A1-209ENST00000474432 CCDC175P0C221 793 aa17.97■□□□□ 0.47
COL7A1-209ENST00000474432 OR56A5P0C7T3 313 aa17.97■□□□□ 0.47
COL7A1-209ENST00000474432 PTPN4P29074 926 aa17.97■□□□□ 0.47
COL7A1-209ENST00000474432 PEBP1P30086 187 aaKnown RBP17.97■□□□□ 0.47
COL7A1-209ENST00000474432 CRADDP78560 199 aa17.97■□□□□ 0.47
COL7A1-209ENST00000474432 IL10RAQ13651 578 aa17.97■□□□□ 0.47
COL7A1-209ENST00000474432 LYPLAL1Q5VWZ2 237 aa17.97■□□□□ 0.47
COL7A1-209ENST00000474432 ZNF449Q6P9G9 518 aa17.97■□□□□ 0.47
COL7A1-209ENST00000474432 SPESP1Q6UW49 350 aa17.97■□□□□ 0.47
COL7A1-209ENST00000474432 CDHR3Q6ZTQ4 885 aa17.97■□□□□ 0.47
COL7A1-209ENST00000474432 NLRP9Q7RTR0 991 aa17.97■□□□□ 0.47
COL7A1-209ENST00000474432 TRIM73Q86UV7 250 aa17.97■□□□□ 0.47
COL7A1-209ENST00000474432 TBC1D21Q8IYX1 336 aa17.97■□□□□ 0.47
COL7A1-209ENST00000474432 DSELQ8IZU8 1212 aa17.97■□□□□ 0.47
COL7A1-209ENST00000474432 CCDC89Q8N998 374 aa17.97■□□□□ 0.47
COL7A1-209ENST00000474432 OR6P1Q8NGX9 317 aa17.97■□□□□ 0.47
COL7A1-209ENST00000474432 OR5K2Q8NHB8 316 aa17.97■□□□□ 0.47
COL7A1-209ENST00000474432 MENTQ9BUN1 341 aa17.97■□□□□ 0.47
COL7A1-209ENST00000474432 AP1M1Q9BXS5 423 aa17.97■□□□□ 0.47
COL7A1-209ENST00000474432 SYTL2Q9HCH5 934 aa17.97■□□□□ 0.47
COL7A1-209ENST00000474432 PCMTD2Q9NV79 361 aa17.97■□□□□ 0.47
COL7A1-209ENST00000474432 ASF1AQ9Y294 204 aa17.97■□□□□ 0.47
COL7A1-209ENST00000474432 PCSK5Q92824 1860 aa17.97■□□□□ 0.47
COL7A1-209ENST00000474432 IQCF5A8MTL0 148 aa17.96■□□□□ 0.47
COL7A1-209ENST00000474432 MEN1O00255 615 aa17.96■□□□□ 0.47
COL7A1-209ENST00000474432 GAS8O95995 478 aa17.96■□□□□ 0.47
COL7A1-209ENST00000474432 UGT2B7P16662 529 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms