RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 PTPN13Q12923 2485 aa15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 LIN7AO14910 233 aaPredicted RBP15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 OR1I1O60431 355 aa15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 SCRG1O75711 98 aa15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 FGGP02679 453 aa15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 OR56A5P0C7T3 313 aa15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 RPL22P35268 128 aaKnown RBP15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 CSE1LP55060 971 aaKnown RBP15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 PRAMEP78395 509 aa15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 CCNG2Q16589 344 aa15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 LYPLAL1Q5VWZ2 237 aa15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 FAM199XQ6PEV8 388 aaPredicted RBP15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 GSTA5Q7RTV2 222 aa15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 BPHLQ86WA6 291 aaPredicted RBP15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 AMIGO1Q86WK6 493 aa15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 CARFQ8N187 725 aa15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 PPHLN1Q8NEY8 458 aaKnown RBP15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 OR5AR1Q8NGP9 310 aa15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 ZNF501Q96CX3 271 aaPredicted RBP15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 FCRL4Q96PJ5 515 aa15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 RUFY1Q96T51 708 aa15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 TTC1Q99614 292 aa15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 KLHL25Q9H0H3 589 aa15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 TFB2MQ9H5Q4 396 aaKnown RBP15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 AKIRIN1Q9H9L7 192 aaPredicted RBP15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 FANCEQ9HB96 536 aa15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 C1GALT1Q9NS00 363 aa15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 KCND1Q9NSA2 647 aa15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 ANAPC2Q9UJX6 822 aa15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 ASF1AQ9Y294 204 aa15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 TDRKHQ9Y2W6 561 aaKnown RBP15.25■□□□□ 0.03
CCDC88B-205ENST00000472524 CDC14CA4D256 554 aa15.24■□□□□ 0.03
CCDC88B-205ENST00000472524 CPNE3O75131 537 aaKnown RBP15.24■□□□□ 0.03
CCDC88B-205ENST00000472524 FURINP09958 794 aa15.24■□□□□ 0.03
CCDC88B-205ENST00000472524 PVRP15151 417 aa15.24■□□□□ 0.03
CCDC88B-205ENST00000472524 ST6GAL1P15907 406 aa15.24■□□□□ 0.03
CCDC88B-205ENST00000472524 PRDX3P30048 256 aaKnown RBP15.24■□□□□ 0.03
CCDC88B-205ENST00000472524 SESN2P58004 480 aaPredicted RBP15.24■□□□□ 0.03
CCDC88B-205ENST00000472524 BASP1P80723 227 aaKnown RBP15.24■□□□□ 0.03
CCDC88B-205ENST00000472524 UBAP2LQ14157 1087 aaKnown RBP15.24■□□□□ 0.03
CCDC88B-205ENST00000472524 SEMA3AQ14563 771 aa15.24■□□□□ 0.03
CCDC88B-205ENST00000472524 KCTD19Q17RG1 926 aaPredicted RBP15.24■□□□□ 0.03
CCDC88B-205ENST00000472524 CRTC2Q53ET0 693 aaPredicted RBP15.24■□□□□ 0.03
CCDC88B-205ENST00000472524 FASTKD1Q53R41 847 aaKnown RBP15.24■□□□□ 0.03
CCDC88B-205ENST00000472524 PRAMEF17Q5VTA0 474 aa15.24■□□□□ 0.03
CCDC88B-205ENST00000472524 ZNF662Q6ZS27 426 aa15.24■□□□□ 0.03
CCDC88B-205ENST00000472524 ZNF534Q76KX8 674 aa15.24■□□□□ 0.03
CCDC88B-205ENST00000472524 TMEM135Q86UB9 458 aa15.24■□□□□ 0.03
CCDC88B-205ENST00000472524 LRRC8AQ8IWT6 810 aa15.24■□□□□ 0.03
CCDC88B-205ENST00000472524 OR4L1Q8NH43 312 aa15.24■□□□□ 0.03
CCDC88B-205ENST00000472524 OR8K5Q8NH50 307 aa15.24■□□□□ 0.03
CCDC88B-205ENST00000472524 TWSG1Q9GZX9 223 aa15.24■□□□□ 0.03
CCDC88B-205ENST00000472524 ACTL8Q9H568 366 aa15.24■□□□□ 0.03
CCDC88B-205ENST00000472524 ACTR10Q9NZ32 417 aa15.24■□□□□ 0.03
CCDC88B-205ENST00000472524 ANKMY1Q9P2S6 941 aa15.24■□□□□ 0.03
CCDC88B-205ENST00000472524 RIMKLBQ9ULI2 386 aa15.24■□□□□ 0.03
CCDC88B-205ENST00000472524 ICKQ9UPZ9 632 aa15.24■□□□□ 0.03
CCDC88B-205ENST00000472524 PCM1Q15154 2024 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 SLC5A10A0PJK1 596 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 PIPSLA2A3N6 862 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 C2orf74A8MZ97 194 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 C21orf140B9A014 251 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 TMEM150CB9EJG8 249 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 K7EM74 188 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 CEP104O60308 925 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 CREG1O75629 220 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 NR1D1P20393 614 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 CXCR5P32302 372 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 KCNJ1P48048 391 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 RPS18P62269 152 aaKnown RBP15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 CRADDP78560 199 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 CCZ1BP86790 482 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 CCZ1P86791 482 aaPredicted RBP15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 ACVR1Q04771 509 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 ABRQ12979 859 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 GPS2Q13227 327 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 LACTB2Q53H82 288 aaPredicted RBP15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 NLRP9Q7RTR0 991 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 LDB1Q86U70 411 aaPredicted RBP15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 HOOK3Q86VS8 718 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 ADGRF3Q8IZF5 1079 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 TRIM58Q8NG06 486 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 MAIP1Q8WWC4 291 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 MR1Q95460 341 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 LATS2Q9NRM7 1088 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 PLAGL1Q9UM63 463 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 POLHQ9Y253 713 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 PLAAQ9Y263 795 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 PCDHGA6Q9Y5G7 932 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 KCNMB2Q9Y691 235 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 ANKRD12Q6UB98 2062 aa15.23■□□□□ 0.03
CCDC88B-205ENST00000472524 F8W8V4 182 aa15.22■□□□□ 0.03
CCDC88B-205ENST00000472524 MAP3K7O43318 606 aa15.22■□□□□ 0.03
CCDC88B-205ENST00000472524 ACADLP28330 430 aa15.22■□□□□ 0.03
CCDC88B-205ENST00000472524 SHMT2P34897 504 aa15.22■□□□□ 0.03
CCDC88B-205ENST00000472524 PPARGP37231 505 aaPredicted RBP15.22■□□□□ 0.03
CCDC88B-205ENST00000472524 TERF1P54274 439 aa15.22■□□□□ 0.03
CCDC88B-205ENST00000472524 PCID2Q5JVF3 399 aa15.22■□□□□ 0.03
CCDC88B-205ENST00000472524 DRICH1Q6PGQ1 229 aaPredicted RBP15.22■□□□□ 0.03
CCDC88B-205ENST00000472524 TRIM73Q86UV7 250 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms