RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 C9orf43Q8TAL5 461 aaPredicted RBP5.25□□□□□ -1.57
SYNE1-220ENST00000471834 TMEM169Q96HH4 297 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 SLC25A37Q9NYZ2 338 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 WARS2Q9UGM6 360 aaKnown RBP5.25□□□□□ -1.57
SYNE1-220ENST00000471834 PIN4Q9Y237 131 aaKnown RBP5.25□□□□□ -1.57
SYNE1-220ENST00000471834 MRPL42Q9Y6G3 142 aaKnown RBP5.25□□□□□ -1.57
SYNE1-220ENST00000471834 RALGAPA2Q2PPJ7 1873 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 B8ZZF3 427 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 SLC30A4O14863 429 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 FGF10O15520 208 aaPredicted RBP5.25□□□□□ -1.57
SYNE1-220ENST00000471834 ANXA9O76027 345 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 KRT6AP02538 564 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 HDCP19113 662 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 KRT6CP48668 564 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 BNC1Q01954 994 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 SYTL3Q4VX76 610 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 CEP78Q5JTW2 689 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 FAM109BQ6ICB4 259 aaPredicted RBP5.25□□□□□ -1.57
SYNE1-220ENST00000471834 SBSNQ6UWP8 590 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 GK5Q6ZS86 529 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 TMCO5AQ8N6Q1 288 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 ASCC1Q8N9N2 400 aaKnown RBP5.25□□□□□ -1.57
SYNE1-220ENST00000471834 FBXO22Q8NEZ5 403 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 OR52K1Q8NGK4 314 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 VPS33AQ96AX1 596 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 RMDN1Q96DB5 314 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 SPATA9Q9BWV2 254 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 CAPN10Q9HC96 672 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 B3GNT2Q9NY97 397 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 TDRKHQ9Y2W6 561 aaKnown RBP5.25□□□□□ -1.57
SYNE1-220ENST00000471834 CFAP99D6REC4 459 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 H3BMM5 538 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 GUCY1B2O75343 617 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 GCM2O75603 506 aaPredicted RBP5.25□□□□□ -1.57
SYNE1-220ENST00000471834 MMP2P08253 660 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 GNG2P59768 71 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 TTLL4Q14679 1199 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 ZNF79Q15937 498 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 PLEKHG6Q3KR16 790 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 SGO1Q5FBB7 561 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 TXNDC11Q6PKC3 985 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 HAVCR2Q8TDQ0 301 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 SRRQ9GZT4 340 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 TWSG1Q9GZX9 223 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 P2RY12Q9H244 342 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP5.25□□□□□ -1.57
SYNE1-220ENST00000471834 UBQLN1Q9UMX0 589 aaKnown RBP5.25□□□□□ -1.57
SYNE1-220ENST00000471834 AAR2Q9Y312 384 aaKnown RBP5.25□□□□□ -1.57
SYNE1-220ENST00000471834 PEX16Q9Y5Y5 336 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 V9GYH0 126 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 PHIPQ8WWQ0 1821 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 DRGXA6NNA5 263 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 TSPAN1O60635 241 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 TMEM127O75204 238 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 HK1P19367 917 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 PBLDP30039 288 aaPredicted RBP5.25□□□□□ -1.57
SYNE1-220ENST00000471834 CALCRP30988 508 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 SOAT1P35610 550 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 CCR10P46092 362 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 TMED10P49755 219 aaKnown RBP5.25□□□□□ -1.57
SYNE1-220ENST00000471834 SPDYE7PQ495Y7 208 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 SPERTQ8NA61 448 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 ZNF555Q8NEP9 628 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 LHFPL5Q8TAF8 219 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 SH3KBP1Q96B97 665 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 LRRC46Q96FV0 321 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 APBA2Q99767 749 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 TP63Q9H3D4 680 aaPredicted RBP5.25□□□□□ -1.57
SYNE1-220ENST00000471834 RMI1Q9H9A7 625 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 RDH14Q9HBH5 336 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 MARK1Q9P0L2 795 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 SLC17A6Q9P2U8 582 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 PCDHB7Q9Y5E2 793 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 NCF1BA6NI72 391 aaPredicted RBP5.25□□□□□ -1.57
SYNE1-220ENST00000471834 NCF1CA8MVU1 366 aaPredicted RBP5.25□□□□□ -1.57
SYNE1-220ENST00000471834 PDHXO00330 501 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 KDM1AO60341 852 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 PQBP1O60828 265 aaKnown RBP5.25□□□□□ -1.57
SYNE1-220ENST00000471834 WDR47O94967 919 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 CTSHP09668 335 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 IL10P22301 178 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 MECP2P51608 486 aaKnown RBP5.25□□□□□ -1.57
SYNE1-220ENST00000471834 CCR3P51677 355 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 SP3Q02447 781 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 ACSM1Q08AH1 577 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 TBCELQ5QJ74 424 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 BHLHB9Q6PI77 547 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 METTL4Q8N3J2 472 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 NXNL1Q96CM4 212 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 REPS1Q96D71 796 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 TSPAN17Q96FV3 270 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 SEPT5Q99719 369 aaPredicted RBP5.25□□□□□ -1.57
SYNE1-220ENST00000471834 NPAS2Q99743 824 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 NTMT1Q9BV86 223 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 SLC29A3Q9BZD2 475 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 PDFQ9HBH1 243 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 C20orf96Q9NUD7 363 aaPredicted RBP5.25□□□□□ -1.57
SYNE1-220ENST00000471834 TBKBP1A7MCY6 615 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 IRAK2O43187 625 aa5.24□□□□□ -1.57
SYNE1-220ENST00000471834 HOXC11O43248 304 aaPredicted RBP5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms