RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 FEM1CQ96JP0 617 aa4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 EBNA1BP2Q99848 306 aaKnown RBP4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 OMDQ99983 421 aa4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 TDRD1Q9BXT4 1180 aaKnown RBP4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 FRMD8Q9BZ67 464 aaPredicted RBP4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 CPEB1Q9BZB8 566 aaKnown RBP4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 TSPYL1Q9H0U9 437 aa4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 TMEM245Q9H330 911 aa4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 NELFAQ9H3P2 528 aa4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 CENPHQ9H3R5 247 aa4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 MFSD1Q9H3U5 465 aa4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 FAM96AQ9H5X1 160 aa4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 TCF7L1Q9HCS4 588 aa4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 TRPV5Q9NQA5 729 aa4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 DMRT3Q9NQL9 472 aa4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 ARHGEF3Q9NR81 526 aa4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 IARS2Q9NSE4 1012 aaKnown RBP4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 C20orf96Q9NUD7 363 aaPredicted RBP4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 IL1RAPL1Q9NZN1 696 aa4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 BCCIPQ9P287 314 aaKnown RBP eCLIP4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 WNT16Q9UBV4 365 aa4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 SLC2A6Q9UGQ3 507 aa4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 TUBD1Q9UJT1 453 aa4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 SARDHQ9UL12 918 aa4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 PHTF1Q9UMS5 762 aa4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 MRPS17Q9Y2R5 130 aaKnown RBP4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 ARL5AQ9Y689 179 aa4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 RPS6KL1Q9Y6S9 549 aa4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 FAM169AQ9Y6X4 670 aa4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 COL4A3Q01955 1670 aa4.06□□□□□ -1.76
TMEM39A-204ENST00000468545 MIA3Q5JRA6 1907 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 TICRRQ7Z2Z1 1910 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 DENND4AQ7Z401 1863 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 SPTBN5Q9NRC6 3674 aaKnown RBP4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 LAMA2P24043 3122 aaKnown RBP4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 A0A087WUV0 522 aaPredicted RBP4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 A0A0J9YYE9 177 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 C1orf232A0A0U1RR37 186 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 TCRBV21S2A2A0A5A6 115 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 HEATR9A2RTY3 570 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 OR51F1A6NGY5 319 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 FAM47DPA6NHR8 397 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 SHISA7A6NL88 538 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 C2orf81A6NN90 581 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 FAM171A2A8MVW0 826 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 TRAFD1O14545 582 aaPredicted RBP4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 NPC1O15118 1278 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 GPR42O15529 346 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 RIPK2O43353 540 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 HTRA2O43464 458 aaPredicted RBP4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 AKAP10O43572 662 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 SOCS5O75159 536 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 RNASEH2AO75792 299 aaKnown RBP4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 VAPBO95292 243 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 TTC4O95801 387 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 EPOP01588 193 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 TRBC1P01850 177 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 DNTTP04053 509 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 SHBGP04278 402 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 FGF1P05230 155 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 POLBP06746 335 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 DCNP07585 359 aaKnown RBP4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 ERVK-10P10266 1014 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 CHRNB1P11230 501 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 ACADMP11310 421 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 CYP2A6P11509 494 aaPredicted RBP4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 ALADP13716 330 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 PGAM1P18669 254 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 CRHR1P34998 444 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 PHBP35232 272 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 SLCO1A2P46721 670 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 PXNP49023 591 aaPredicted RBP4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 GPX6P59796 221 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 RPS14P62263 151 aaKnown RBP4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 POLR2LP62875 67 aaKnown RBP4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 ZXDAP98168 799 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 SATB1Q01826 763 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 PPARDQ03181 441 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 DUSP2Q05923 314 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 CNTN1Q12860 1018 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 THOC5Q13769 683 aaKnown RBP4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 ARHGEF7Q14155 803 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 CASP8Q14790 479 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 GRM3Q14832 879 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 EFTUD2Q15029 972 aaKnown RBP eCLIP4.05□□□□□ -1.769e-7■■■□□ 18.7
TMEM39A-204ENST00000468545 ACOX1Q15067 660 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 TAF1AQ15573 450 aaPredicted RBP4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 CST6Q15828 149 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 CNGA3Q16281 694 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 UGP2Q16851 508 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 LONRF1Q17RB8 773 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 FBXO43Q4G163 708 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 ANKRD20A4Q4UJ75 823 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 HSP90AA5PQ58FG0 334 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 ZNF805Q5CZA5 627 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 ZRANB3Q5FWF4 1079 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 TMEM31Q5JXX7 168 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 SPANXN3Q5MJ09 141 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 TSTD2Q5T7W7 516 aa4.05□□□□□ -1.76
TMEM39A-204ENST00000468545 FAM46CQ5VWP2 391 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms