RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 CNKSR3Q6P9H4 555 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 RNF111Q6ZNA4 994 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 TRILQ7L0X0 811 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 SETD3Q86TU7 594 aaPredicted RBP4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 TTC7BQ86TV6 843 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 VASH2Q86V25 355 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 MOGAT3Q86VF5 341 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 ZFAND4Q86XD8 727 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 PRSS58Q8IYP2 241 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 TAGAPQ8N103 731 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 OR10J5Q8NHC4 309 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 RP9Q8TA86 221 aaKnown RBP4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 GIPC3Q8TF64 312 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 HASPINQ8TF76 798 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 PYROXD1Q8WU10 500 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 RSC1A1Q92681 617 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 GDAP1L1Q96MZ0 367 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 BDH2Q9BUT1 245 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 TWSG1Q9GZX9 223 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 MAGEE1Q9HCI5 957 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 TMEM8AQ9HCN3 771 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 C19orf12Q9NSK7 152 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 THUMPD1Q9NXG2 353 aaKnown RBP4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 IGSF9Q9P2J2 1179 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 RPH3ALQ9UNE2 315 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 PLCL2Q9UPR0 1127 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 PUS1Q9Y606 427 aaKnown RBP eCLIP4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 RAD54BQ9Y620 910 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 A0A1B0GUL6 1792 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 ZSWIM8A7E2V4 1837 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 ZNF609O15014 1411 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 ARHGEF35A5YM69 484 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 WRBO00258 174 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 TXNDC9O14530 226 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 PSMA7O14818 248 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 TOX3O15405 576 aaPredicted RBP4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 AQP9O43315 295 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 CSDE1O75534 798 aaKnown RBP4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 SERPINI2O75830 405 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 VNN1O95497 513 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 VNN2O95498 520 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 TGM6O95932 706 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 ONECUT2O95948 504 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 MBP02144 154 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 AHSGP02765 367 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 SUPT20HL2P0C7V6 817 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 ATF2P15336 505 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 TGM1P22735 817 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 PTGS1P23219 599 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 CCND2P30279 289 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 LCN1P31025 176 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 TALDO1P37837 337 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 BUD31P41223 144 aaPredicted RBP4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 PPP3CCP48454 512 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 CRYBB1P53674 252 aaPredicted RBP4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 EIF3BP55884 814 aaKnown RBP4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 ANTXR2P58335 489 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 RPL10AP62906 217 aaKnown RBP4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 SLC3A1Q07837 685 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 ALKBH1Q13686 389 aaKnown RBP4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 ITGA9Q13797 1035 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 PIGHQ14442 188 aaPredicted RBP4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 PDK2Q15119 407 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 FAM189A2Q15884 450 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 ETFDHQ16134 617 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 SLC5A12Q1EHB4 618 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 ADCK5Q3MIX3 580 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 KHDC1LQ5JSQ8 128 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 PRAMEF20Q5VT98 475 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 HLA-DQA1Q5Y7H0 255 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 RAET1GQ6H3X3 334 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 USP17L6PQ6QN14 398 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 KIAA0408Q6ZU52 694 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 ERN2Q76MJ5 926 aaKnown RBP4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 KANSL1Q7Z3B3 1105 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 LINC00523Q86TU6 105 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 MON1AQ86VX9 555 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 SPACA3Q8IXA5 215 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 ASCC1Q8N9N2 400 aaKnown RBP4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 OR5T1Q8NG75 326 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 OR4D10Q8NGI6 311 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 ISG20Q96AZ6 181 aaKnown RBP4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 FAM136AQ96C01 138 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 C5orf34Q96MH7 638 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 PPP1R2P1Q96PQ5 205 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 FDXACB1Q9BRP7 624 aaPredicted RBP4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 CHID1Q9BWS9 393 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 CEP41Q9BYV8 373 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 ADAM7Q9H2U9 754 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 NARFLQ9H6Q4 476 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 VIPAS39Q9H9C1 493 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 SEPSECSQ9HD40 501 aaKnown RBP4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 NT5MQ9NPB1 228 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 TBC1D23Q9NUY8 699 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 FBXO28Q9NVF7 368 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 CTTNBP2NLQ9P2B4 639 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 RBPJLQ9UBG7 517 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 CTSFQ9UBX1 484 aa4.72□□□□□ -1.65
CCDC88A-209ENST00000456975 APPL1Q9UKG1 709 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms