RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 IZUMO3Q5VZ72 239 aa7.56□□□□□ -1.2
CD44-211ENST00000442151 PPP1R21Q6ZMI0 780 aa7.56□□□□□ -1.2
CD44-211ENST00000442151 FAM83HQ6ZRV2 1179 aaPredicted RBP7.56□□□□□ -1.2
CD44-211ENST00000442151 ASB18Q6ZVZ8 466 aa7.56□□□□□ -1.2
CD44-211ENST00000442151 SERPINA9Q86WD7 417 aa7.56□□□□□ -1.2
CD44-211ENST00000442151 AMIGO1Q86WK6 493 aa7.56□□□□□ -1.2
CD44-211ENST00000442151 PTRH1Q86Y79 214 aaKnown RBP7.56□□□□□ -1.2
CD44-211ENST00000442151 RAB43Q86YS6 212 aa7.56□□□□□ -1.2
CD44-211ENST00000442151 KLHDC8BQ8IXV7 354 aa7.56□□□□□ -1.2
CD44-211ENST00000442151 TBC1D21Q8IYX1 336 aa7.56□□□□□ -1.2
CD44-211ENST00000442151 TFGQ92734 400 aaPredicted RBP7.56□□□□□ -1.2
CD44-211ENST00000442151 PEX13Q92968 403 aa7.56□□□□□ -1.2
CD44-211ENST00000442151 TCTN2Q96GX1 697 aa7.56□□□□□ -1.2
CD44-211ENST00000442151 CDKN2AIPNLQ96HQ2 116 aa7.56□□□□□ -1.2
CD44-211ENST00000442151 CHRNA10Q9GZZ6 450 aa7.56□□□□□ -1.2
CD44-211ENST00000442151 COG4Q9H9E3 785 aa7.56□□□□□ -1.2
CD44-211ENST00000442151 INTS7Q9NVH2 962 aaKnown RBP7.56□□□□□ -1.2
CD44-211ENST00000442151 AHCTF1Q8WYP5 2266 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 IGLV3-16A0A075B6K0 115 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 SLC9B1P1A6NJY1 282 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 E7EQ34 232 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 F5H423 210 aaPredicted RBP7.55□□□□□ -1.2
CD44-211ENST00000442151 GAPDHSO14556 408 aaPredicted RBP7.55□□□□□ -1.2
CD44-211ENST00000442151 LDB2O43679 373 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 KRT86O43790 486 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 KIF1CO43896 1103 aaKnown RBP7.55□□□□□ -1.2
CD44-211ENST00000442151 FKBP9O95302 570 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 AP2A1O95782 977 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 NTRK1P04629 796 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 EBLN1P0CF75 366 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 ZNF28P17035 718 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 POLR2CP19387 275 aaPredicted RBP7.55□□□□□ -1.2
CD44-211ENST00000442151 ADRA1DP25100 572 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 PGDP52209 483 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 ZNF140P52738 457 aaPredicted RBP7.55□□□□□ -1.2
CD44-211ENST00000442151 ITGA1P56199 1179 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 SEMA5AQ13591 1074 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 ARMC3Q5W041 872 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 PWWP2BQ6NUJ5 590 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 PACS1Q6VY07 963 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 MED25Q71SY5 747 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 PHC3Q8NDX5 983 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 OR13C4Q8NGS5 318 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 GPR150Q8NGU9 434 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 CT55Q8WUE5 264 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 FER1L6-AS2Q96M78 137 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 APOL2Q9BQE5 337 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 NLNQ9BYT8 704 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 ZNF71Q9NQZ8 489 aaPredicted RBP7.55□□□□□ -1.2
CD44-211ENST00000442151 HOMER3Q9NSC5 361 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 SMARCAL1Q9NZC9 954 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 OR6C2Q9NZP2 312 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 POMT2Q9UKY4 750 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 SNX7Q9UNH6 387 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 PCDHGA9Q9Y5G4 932 aaKnown RBP7.55□□□□□ -1.2
CD44-211ENST00000442151 TRBV5-4A0A0C4DH59 114 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 SOWAHDA6NJG2 315 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 MEN1O00255 615 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 PEX12O00623 359 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 DPM1O60762 260 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 VPS4BO75351 444 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 ZIC2O95409 532 aaPredicted RBP7.55□□□□□ -1.2
CD44-211ENST00000442151 MSNP26038 577 aaKnown RBP7.55□□□□□ -1.2
CD44-211ENST00000442151 PRDX3P30048 256 aaKnown RBP7.55□□□□□ -1.2
CD44-211ENST00000442151 MARCKSL1P49006 195 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 KPNA2P52292 529 aaKnown RBP7.55□□□□□ -1.2
CD44-211ENST00000442151 SARNPP82979 210 aaKnown RBP7.55□□□□□ -1.2
CD44-211ENST00000442151 NAA25Q14CX7 972 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 TMED2Q15363 201 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 FASTKD1Q53R41 847 aaKnown RBP7.55□□□□□ -1.2
CD44-211ENST00000442151 DNAJC21Q5F1R6 531 aaKnown RBP7.55□□□□□ -1.2
CD44-211ENST00000442151 KCTD11Q693B1 232 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 TLDC1Q6P9B6 456 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 AFTPHQ6ULP2 937 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 DSELQ8IZU8 1212 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 TMEM102Q8N9M5 508 aaPredicted RBP7.55□□□□□ -1.2
CD44-211ENST00000442151 FAM71DQ8N9W8 422 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 MAGEC3Q8TD91 643 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 DLG3Q92796 817 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 ZNF501Q96CX3 271 aaPredicted RBP7.55□□□□□ -1.2
CD44-211ENST00000442151 RANBP9Q96S59 729 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 SLC25A23Q9BV35 468 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 GOLPH3Q9H4A6 298 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 ACTL8Q9H568 366 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 ACTR5Q9H9F9 607 aaPredicted RBP7.55□□□□□ -1.2
CD44-211ENST00000442151 IL1RAPL1Q9NZN1 696 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 PAK5Q9P286 719 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 VPS4AQ9UN37 437 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 SRPK3Q9UPE1 567 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 ZNF148Q9UQR1 794 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 ASF1AQ9Y294 204 aa7.55□□□□□ -1.2
CD44-211ENST00000442151 CFAP20Q9Y6A4 193 aaKnown RBP7.55□□□□□ -1.2
CD44-211ENST00000442151 GRID2IPA4D2P6 1211 aa7.54□□□□□ -1.2
CD44-211ENST00000442151 IPO13O94829 963 aaKnown RBP7.54□□□□□ -1.2
CD44-211ENST00000442151 APOA4P06727 396 aa7.54□□□□□ -1.2
CD44-211ENST00000442151 PSMA3P25788 255 aa7.54□□□□□ -1.2
CD44-211ENST00000442151 CDC25BP30305 580 aa7.54□□□□□ -1.2
CD44-211ENST00000442151 ARSFP54793 590 aa7.54□□□□□ -1.2
CD44-211ENST00000442151 PRAMEP78395 509 aa7.54□□□□□ -1.2
CD44-211ENST00000442151 BOP1Q14137 746 aaKnown RBP7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms