RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 XKR5Q6UX68 686 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 MICALCLQ6ZW33 695 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 ZNF438Q7Z4V0 828 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 TECPR1Q7Z6L1 1165 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 PHYKPLQ8IUZ5 450 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 GPBAR1Q8TDU6 330 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 MTBPQ96DY7 904 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 PGM2Q96G03 612 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 VPS39Q96JC1 886 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 TCF12Q99081 682 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 CMKLR1Q99788 373 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 ARHGAP9Q9BRR9 750 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 RIOK2Q9BVS4 552 aaKnown RBP11.92□□□□□ -0.5
PTPRF-208ENST00000437607 UGT1A7Q9HAW7 530 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 UGT1A10Q9HAW8 530 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 UGT1A8Q9HAW9 530 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 MED4Q9NPJ6 270 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 SMOXQ9NWM0 555 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 HEMK1Q9Y5R4 338 aaPredicted RBP11.92□□□□□ -0.5
PTPRF-208ENST00000437607 CFAP99D6REC4 459 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 AGPSO00116 658 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 FAM155BO75949 473 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 CPNE6O95741 557 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 CEACAM5P06731 702 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 SNRPAP09012 282 aaKnown RBP11.91□□□□□ -0.5
PTPRF-208ENST00000437607 PRSS56P0CW18 603 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 KELP23276 732 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 ACRV1P26436 265 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 GPR1P46091 355 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 SERPINB8P50452 374 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 SLC12A2P55011 1212 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 SEMA3AQ14563 771 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 ITIH4Q14624 930 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 DBN1Q16643 649 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 AGBL2Q5U5Z8 902 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 RFLNAQ6ZTI6 216 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 LDB1Q86U70 411 aaPredicted RBP11.91□□□□□ -0.5
PTPRF-208ENST00000437607 ZC3HC1Q86WB0 502 aaKnown RBP11.91□□□□□ -0.5
PTPRF-208ENST00000437607 SERPINA9Q86WD7 417 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 NXPE1Q8N323 547 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 GPATCH11Q8N954 259 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 RCBTB1Q8NDN9 531 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 GDAP1Q8TB36 358 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 ZNF398Q8TD17 642 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 DTX3LQ8TDB6 740 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 PATE1Q8WXA2 126 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 SCAMP4Q969E2 229 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 ELMO2Q96JJ3 720 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 SH3GL2Q99962 352 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 NUDT22Q9BRQ3 303 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 ZCCHC2Q9C0B9 1178 aaKnown RBP11.91□□□□□ -0.5
PTPRF-208ENST00000437607 B3GNT4Q9C0J1 378 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 ABCG8Q9H221 673 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 FAM96AQ9H5X1 160 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 WDR26Q9H7D7 661 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 TMBIM4Q9HC24 238 aa11.91□□□□□ -0.5
PTPRF-208ENST00000437607 TRBV5-4A0A0C4DH59 114 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 IGHV5-10-1A0A0J9YXX1 117 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 FAM95CA0A1B0GW59 222 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 HMGB1P1B2RPK0 211 aaPredicted RBP11.9□□□□□ -0.5
PTPRF-208ENST00000437607 TRIM49D1C9J1S8 452 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 F7P08709 466 aaPredicted RBP11.9□□□□□ -0.5
PTPRF-208ENST00000437607 RALBP11234 206 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 FGF3P11487 239 aaPredicted RBP11.9□□□□□ -0.5
PTPRF-208ENST00000437607 MYCLP1P12525 358 aaPredicted RBP11.9□□□□□ -0.5
PTPRF-208ENST00000437607 ZNF7P17097 686 aaPredicted RBP11.9□□□□□ -0.5
PTPRF-208ENST00000437607 AK4P27144 223 aaPredicted RBP11.9□□□□□ -0.5
PTPRF-208ENST00000437607 CD82P27701 267 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 CD1CP29017 333 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 LEPRP48357 1165 aaKnown RBP11.9□□□□□ -0.5
PTPRF-208ENST00000437607 DPTQ07507 201 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 AMZ1Q400G9 498 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 ATP13A5Q4VNC0 1218 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 LDLRAP1Q5SW96 308 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 MROH9Q5TGP6 573 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 FAM45BPQ6NSW5 357 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 ATG14Q6ZNE5 492 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 PIM3Q86V86 326 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 PIANPQ8IYJ0 282 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 DDHD1Q8NEL9 900 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 FAM45AQ8TCE6 357 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 ZDHHC1Q8WTX9 485 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 JPH3Q8WXH2 748 aaPredicted RBP11.9□□□□□ -0.5
PTPRF-208ENST00000437607 DCUN1D1Q96GG9 259 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 VPS35Q96QK1 796 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 COPS8Q99627 209 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 GPR22Q99680 433 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 SLC12A9Q9BXP2 914 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 TEX101Q9BY14 249 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 CARS2Q9HA77 564 aaKnown RBP11.9□□□□□ -0.5
PTPRF-208ENST00000437607 ZDHHC3Q9NYG2 299 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 EURLQ9NYK6 297 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 SENP1Q9P0U3 644 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 TAAR2Q9P1P5 351 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 MOSPD1Q9UJG1 213 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 GNPTGQ9UJJ9 305 aa11.9□□□□□ -0.5
PTPRF-208ENST00000437607 FADS2P1A8MWK0 482 aa11.89□□□□□ -0.51
PTPRF-208ENST00000437607 F8W8V4 182 aa11.89□□□□□ -0.51
PTPRF-208ENST00000437607 PRMT5O14744 637 aaPredicted RBP11.89□□□□□ -0.51
PTPRF-208ENST00000437607 MT-ND3P03897 115 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms