RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 PADI2Q9Y2J8 665 aa14.07□□□□□ -0.16
SDC1-204ENST00000429035 TDRKHQ9Y2W6 561 aaKnown RBP14.07□□□□□ -0.16
SDC1-204ENST00000429035 PCDHGA9Q9Y5G4 932 aaKnown RBP14.07□□□□□ -0.16
SDC1-204ENST00000429035 C17orf113A0A1B0GUU1 675 aa14.06□□□□□ -0.16
SDC1-204ENST00000429035 CLEC18AA5D8T8 446 aa14.06□□□□□ -0.16
SDC1-204ENST00000429035 RCCD1A6NED2 376 aa14.06□□□□□ -0.16
SDC1-204ENST00000429035 GOLGA6L9A6NEM1 432 aa14.06□□□□□ -0.16
SDC1-204ENST00000429035 ZNF749O43361 778 aa14.06□□□□□ -0.16
SDC1-204ENST00000429035 LDB2O43679 373 aa14.06□□□□□ -0.16
SDC1-204ENST00000429035 RAB40ALP0C0E4 278 aa14.06□□□□□ -0.16
SDC1-204ENST00000429035 AGXTP21549 392 aa14.06□□□□□ -0.16
SDC1-204ENST00000429035 PTPN7P35236 360 aa14.06□□□□□ -0.16
SDC1-204ENST00000429035 VAV2P52735 878 aa14.06□□□□□ -0.16
SDC1-204ENST00000429035 BOP1Q14137 746 aaKnown RBP14.06□□□□□ -0.16
SDC1-204ENST00000429035 NCF4Q15080 339 aa14.06□□□□□ -0.16
SDC1-204ENST00000429035 DBN1Q16643 649 aa14.06□□□□□ -0.16
SDC1-204ENST00000429035 GPR33Q49SQ1 333 aa14.06□□□□□ -0.16
SDC1-204ENST00000429035 PRR30Q53SZ7 412 aaPredicted RBP14.06□□□□□ -0.16
SDC1-204ENST00000429035 FHL5Q5TD97 284 aa14.06□□□□□ -0.16
SDC1-204ENST00000429035 C1orf189Q5VU69 101 aa14.06□□□□□ -0.16
SDC1-204ENST00000429035 DENND5AQ6IQ26 1287 aa14.06□□□□□ -0.16
SDC1-204ENST00000429035 CLEC18BQ6UXF7 455 aa14.06□□□□□ -0.16
SDC1-204ENST00000429035 RAB43Q86YS6 212 aa14.06□□□□□ -0.16
SDC1-204ENST00000429035 C19orf47Q8N9M1 422 aaKnown RBP14.06□□□□□ -0.16
SDC1-204ENST00000429035 CLEC18CQ8NCF0 446 aa14.06□□□□□ -0.16
SDC1-204ENST00000429035 FDCSPQ8NFU4 85 aa14.06□□□□□ -0.16
SDC1-204ENST00000429035 OR5AR1Q8NGP9 310 aa14.06□□□□□ -0.16
SDC1-204ENST00000429035 ELMO1Q92556 727 aa14.06□□□□□ -0.16
SDC1-204ENST00000429035 TFGQ92734 400 aaPredicted RBP14.06□□□□□ -0.16
SDC1-204ENST00000429035 TRAPPC9Q96Q05 1148 aa14.06□□□□□ -0.16
SDC1-204ENST00000429035 LRRC40Q9H9A6 602 aa14.06□□□□□ -0.16
SDC1-204ENST00000429035 SYTL2Q9HCH5 934 aa14.06□□□□□ -0.16
SDC1-204ENST00000429035 SLAMF7Q9NQ25 335 aa14.06□□□□□ -0.16
SDC1-204ENST00000429035 GPN3Q9UHW5 284 aaPredicted RBP14.06□□□□□ -0.16
SDC1-204ENST00000429035 FEZ2Q9UHY8 353 aaPredicted RBP14.06□□□□□ -0.16
SDC1-204ENST00000429035 ICKQ9UPZ9 632 aa14.06□□□□□ -0.16
SDC1-204ENST00000429035 ASF1AQ9Y294 204 aa14.06□□□□□ -0.16
SDC1-204ENST00000429035 EFR3BQ9Y2G0 817 aa14.06□□□□□ -0.16
SDC1-204ENST00000429035 SPTAN1Q13813 2472 aaKnown RBP14.06□□□□□ -0.16
SDC1-204ENST00000429035 OR51F1A6NGY5 319 aa14.05□□□□□ -0.16
SDC1-204ENST00000429035 AGAP14A8MT82 685 aa14.05□□□□□ -0.16
SDC1-204ENST00000429035 DPM1O60762 260 aa14.05□□□□□ -0.16
SDC1-204ENST00000429035 CSE1LP55060 971 aaKnown RBP14.05□□□□□ -0.16
SDC1-204ENST00000429035 CACNG1Q06432 222 aa14.05□□□□□ -0.16
SDC1-204ENST00000429035 SLC9A5Q14940 896 aa14.05□□□□□ -0.16
SDC1-204ENST00000429035 ZNF789Q5FWF6 425 aa14.05□□□□□ -0.16
SDC1-204ENST00000429035 MLIPQ5VWP3 458 aa14.05□□□□□ -0.16
SDC1-204ENST00000429035 HIST2H2BCQ6DN03 193 aa14.05□□□□□ -0.16
SDC1-204ENST00000429035 SPESP1Q6UW49 350 aa14.05□□□□□ -0.16
SDC1-204ENST00000429035 NAPRTQ6XQN6 538 aa14.05□□□□□ -0.16
SDC1-204ENST00000429035 ZNF517Q6ZMY9 492 aaPredicted RBP14.05□□□□□ -0.16
SDC1-204ENST00000429035 CDHR3Q6ZTQ4 885 aa14.05□□□□□ -0.16
SDC1-204ENST00000429035 KIAA1328Q86T90 577 aa14.05□□□□□ -0.16
SDC1-204ENST00000429035 FAM71DQ8N9W8 422 aa14.05□□□□□ -0.16
SDC1-204ENST00000429035 GALNT11Q8NCW6 608 aa14.05□□□□□ -0.16
SDC1-204ENST00000429035 ACRBPQ8NEB7 543 aa14.05□□□□□ -0.16
SDC1-204ENST00000429035 ADAMTS17Q8TE56 1095 aa14.05□□□□□ -0.16
SDC1-204ENST00000429035 ALG3Q92685 438 aa14.05□□□□□ -0.16
SDC1-204ENST00000429035 SGSM3Q96HU1 749 aa14.05□□□□□ -0.16
SDC1-204ENST00000429035 NUDT9Q9BW91 350 aa14.05□□□□□ -0.16
SDC1-204ENST00000429035 PITPNM3Q9BZ71 974 aa14.05□□□□□ -0.16
SDC1-204ENST00000429035 GPR83Q9NYM4 423 aa14.05□□□□□ -0.16
SDC1-204ENST00000429035 PLAGL1Q9UM63 463 aa14.05□□□□□ -0.16
SDC1-204ENST00000429035 PACSIN2Q9UNF0 486 aaPredicted RBP14.05□□□□□ -0.16
SDC1-204ENST00000429035 DUSP10Q9Y6W6 482 aa14.05□□□□□ -0.16
SDC1-204ENST00000429035 NUP210LQ5VU65 1888 aa14.05□□□□□ -0.16
SDC1-204ENST00000429035 PCSK5Q92824 1860 aa14.05□□□□□ -0.16
SDC1-204ENST00000429035 IGLV3-16A0A075B6K0 115 aa14.04□□□□□ -0.16
SDC1-204ENST00000429035 TRBV5-4A0A0C4DH59 114 aa14.04□□□□□ -0.16
SDC1-204ENST00000429035 GRID2IPA4D2P6 1211 aa14.04□□□□□ -0.16
SDC1-204ENST00000429035 SORBS2O94875 1100 aaKnown RBP14.04□□□□□ -0.16
SDC1-204ENST00000429035 METTL18O95568 372 aa14.04□□□□□ -0.16
SDC1-204ENST00000429035 FTH1P02794 183 aa14.04□□□□□ -0.16
SDC1-204ENST00000429035 UGT2B7P16662 529 aa14.04□□□□□ -0.16
SDC1-204ENST00000429035 MSNP26038 577 aaKnown RBP14.04□□□□□ -0.16
SDC1-204ENST00000429035 SHMT2P34897 504 aa14.04□□□□□ -0.16
SDC1-204ENST00000429035 CD151P48509 253 aa14.04□□□□□ -0.16
SDC1-204ENST00000429035 RRADP55042 308 aa14.04□□□□□ -0.16
SDC1-204ENST00000429035 RPA4Q13156 261 aa14.04□□□□□ -0.16
SDC1-204ENST00000429035 MSLNQ13421 630 aaPredicted RBP14.04□□□□□ -0.16
SDC1-204ENST00000429035 P3H1Q32P28 736 aa14.04□□□□□ -0.16
SDC1-204ENST00000429035 CCDC38Q502W7 563 aa14.04□□□□□ -0.16
SDC1-204ENST00000429035 PIANPQ8IYJ0 282 aa14.04□□□□□ -0.16
SDC1-204ENST00000429035 ADGRF3Q8IZF5 1079 aa14.04□□□□□ -0.16
SDC1-204ENST00000429035 ZBTB2Q8N680 514 aa14.04□□□□□ -0.16
SDC1-204ENST00000429035 STYXQ8WUJ0 223 aa14.04□□□□□ -0.16
SDC1-204ENST00000429035 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.04□□□□□ -0.167e-6■■■■■ 27.5
SDC1-204ENST00000429035 TFB2MQ9H5Q4 396 aaKnown RBP14.04□□□□□ -0.16
SDC1-204ENST00000429035 TXLNGQ9NUQ3 528 aa14.04□□□□□ -0.16
SDC1-204ENST00000429035 NLE1Q9NVX2 485 aaPredicted RBP14.04□□□□□ -0.16
SDC1-204ENST00000429035 IMPACTQ9P2X3 320 aa14.04□□□□□ -0.16
SDC1-204ENST00000429035 NDOR1Q9UHB4 597 aa14.04□□□□□ -0.16
SDC1-204ENST00000429035 EPN1Q9Y6I3 576 aaPredicted RBP14.04□□□□□ -0.16
SDC1-204ENST00000429035 PRSS21Q9Y6M0 314 aa14.04□□□□□ -0.16
SDC1-204ENST00000429035 A0A0J9YY10 115 aa14.03□□□□□ -0.16
SDC1-204ENST00000429035 H7C0S8 307 aa14.03□□□□□ -0.16
SDC1-204ENST00000429035 ZNF189O75820 626 aaPredicted RBP14.03□□□□□ -0.16
SDC1-204ENST00000429035 OR2B3O76000 313 aa14.03□□□□□ -0.16
SDC1-204ENST00000429035 CAPN1P07384 714 aa14.03□□□□□ -0.16
SDC1-204ENST00000429035 HBQ1P09105 142 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms