RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 ORAI3Q9BRQ5 295 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 CCM2Q9BSQ5 444 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 DNAJC18Q9H819 358 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 CERS4Q9HA82 394 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 CD248Q9HCU0 757 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 GDF3Q9NR23 364 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 PDP1Q9P0J1 537 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-204ENST00000423058 FBXO5Q9UKT4 447 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 RIMKLBQ9ULI2 386 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 C5orf51A6NDU8 294 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 FARS2O95363 451 aaKnown RBP6.75□□□□□ -1.33
SCN1A-204ENST00000423058 SCNN1AP37088 669 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 NR1H2P55055 460 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 GTF2BQ00403 316 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 CDKL4Q5MAI5 379 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 UBAP2Q5T6F2 1119 aaKnown RBP6.75□□□□□ -1.33
SCN1A-204ENST00000423058 ZNF613Q6PF04 617 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 ENPP7Q6UWV6 458 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 KCTD13Q8WZ19 329 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 NUSAP1Q9BXS6 441 aaKnown RBP6.75□□□□□ -1.33
SCN1A-204ENST00000423058 MRM3Q9HC36 420 aaKnown RBP6.75□□□□□ -1.33
SCN1A-204ENST00000423058 SNX15Q9NRS6 342 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 AASSQ9UDR5 926 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 PCYOX1Q9UHG3 505 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 NCOA3Q9Y6Q9 1424 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 AGLP35573 1532 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 TRBV23OR9-2A0A075B6M9 112 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 A0A0G2JMP0 313 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 BUD23O43709 281 aaKnown RBP6.75□□□□□ -1.33
SCN1A-204ENST00000423058 MAT2AP31153 395 aaKnown RBP6.75□□□□□ -1.33
SCN1A-204ENST00000423058 GALK2Q01415 458 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 ITGB3BPQ13352 177 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-204ENST00000423058 MLC1Q15049 377 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 DECR1Q16698 335 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 KIAA0319Q5VV43 1072 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 TPGS2Q68CL5 300 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 C16orf46Q6P387 395 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 NPNTQ6UXI9 565 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 ASB18Q6ZVZ8 466 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 LAPTM4BQ86VI4 370 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 PHF13Q86YI8 300 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-204ENST00000423058 CPSF7Q8N684 471 aaKnown RBP6.75□□□□□ -1.33
SCN1A-204ENST00000423058 KIAA0895Q8NCT3 520 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 OR4M2Q8NGB6 313 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 MKL1Q969V6 931 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 C16orf58Q96GQ5 468 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 SAMD11Q96NU1 681 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 IFT27Q9BW83 186 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 ZNF471Q9BX82 626 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-204ENST00000423058 WDR26Q9H7D7 661 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 EDDM13A0A1B0GTR0 161 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 CPSF4LA6NMK7 179 aaKnown RBP6.75□□□□□ -1.33
SCN1A-204ENST00000423058 PLOD2O00469 737 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 SRPRAP08240 638 aaKnown RBP6.75□□□□□ -1.33
SCN1A-204ENST00000423058 ZNF35P13682 527 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 KLRK1P26718 216 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 CD47Q08722 323 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 PDGFRLQ15198 375 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 PDK4Q16654 411 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 DACT2Q5SW24 774 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 NOXRED1Q6NXP6 359 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 C3P1Q6ZMU1 363 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 DHDDSQ86SQ9 333 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 TMEM126BQ8IUX1 230 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 CHERPQ8IWX8 916 aaKnown RBP6.75□□□□□ -1.33
SCN1A-204ENST00000423058 ZNF611Q8N823 705 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 PROKR2Q8NFJ6 384 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 WDR18Q9BV38 432 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 KCND1Q9NSA2 647 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 AP4B1Q9Y6B7 739 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 B4DGG1 531 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 FFAR2O15552 330 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 DHX15O43143 795 aaKnown RBP6.75□□□□□ -1.33
SCN1A-204ENST00000423058 ADH5P11766 374 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 TACR2P21452 398 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 NCBP2P52298 156 aaKnown RBP eCLIP6.75□□□□□ -1.33
SCN1A-204ENST00000423058 PPP1R26Q5T8A7 1209 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-204ENST00000423058 NXPE1Q8N323 547 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 CELF5Q8N6W0 485 aaKnown RBP6.75□□□□□ -1.33
SCN1A-204ENST00000423058 MTMR8Q96EF0 704 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 CNDP2Q96KP4 475 aaKnown RBP6.75□□□□□ -1.33
SCN1A-204ENST00000423058 PRDM12Q9H4Q4 367 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 GLOD4Q9HC38 313 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 PCDHGA2Q9Y5H1 932 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 ZFP37Q9Y6Q3 630 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-204ENST00000423058 PDE4DIPQ5VU43 2346 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 ZNF878C9JN71 531 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 ADH1BP00325 375 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 C8AP07357 584 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 PRPS2P11908 318 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 ENDOUP21128 410 aaKnown RBP6.75□□□□□ -1.33
SCN1A-204ENST00000423058 CLRN1P58418 232 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 CTBP1Q13363 440 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 TOR1AIP1Q5JTV8 583 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 PRAMEF17Q5VTA0 474 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 SMARCD3Q6STE5 483 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 SCIMPQ6UWF3 145 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 RNF19BQ6ZMZ0 732 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 KBTBD2Q8IY47 623 aa6.75□□□□□ -1.33
SCN1A-204ENST00000423058 FAM71AQ8IYT1 594 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms