RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 PLAC9Q5JTB6 97 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 ZNF569Q5MCW4 686 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 PMF1Q6P1K2 205 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 RHBDF2Q6PJF5 856 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 SARM1Q6SZW1 724 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 LONP2Q86WA8 852 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 ZNF677Q86XU0 584 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 KRTAP1-3Q8IUG1 177 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 BBS7Q8IWZ6 715 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 RPLP0P6Q8NHW5 317 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 DDI1Q8WTU0 396 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 PPP1R13BQ96KQ4 1090 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 BPIFA3Q9BQP9 254 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 KRTAP9-9Q9BYP9 154 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 KRTAP9-4Q9BYQ2 154 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 LHX5Q9H2C1 402 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 PRDM13Q9H4Q3 707 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 NMUR1Q9HB89 426 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 POPDC2Q9HBU9 364 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 PRMT8Q9NR22 394 aaPredicted RBP6.41□□□□□ -1.38
USP40-202ENST00000409945 DNAJC17Q9NVM6 304 aaKnown RBP6.41□□□□□ -1.38
USP40-202ENST00000409945 SERGEFQ9UGK8 458 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 HSF4Q9ULV5 492 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 HS3ST3A1Q9Y663 406 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 CACNA1HO95180 2353 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 ARHGEF17Q96PE2 2063 aaPredicted RBP6.41□□□□□ -1.38
USP40-202ENST00000409945 LOC105378220A0A1B0GUY1 285 aaPredicted RBP6.4□□□□□ -1.38
USP40-202ENST00000409945 A6NLC8 198 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 YJEFN3A6XGL0 299 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 E7ENQ6 273 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 CLIC1O00299 241 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 APBB3O95704 486 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 EGFP01133 1207 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 UCHL3P15374 230 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 NDUFS1P28331 727 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 STAT1P42224 750 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 GPD2P43304 727 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 TERF1P54274 439 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 YWHAZP63104 245 aaKnown RBP6.4□□□□□ -1.38
USP40-202ENST00000409945 KDSRQ06136 332 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 SLC14A1Q13336 389 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 DRAP1Q14919 205 aaPredicted RBP6.4□□□□□ -1.38
USP40-202ENST00000409945 MFSD13AQ14CX5 517 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 KRT31Q15323 416 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 PPP1R2P3Q6NXS1 205 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 PCSK4Q6UW60 755 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 TPGS1Q6ZTW0 290 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 SCD5Q86SK9 330 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 GGNQ86UU5 652 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 ADGRF3Q8IZF5 1079 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 C1orf131Q8NDD1 294 aaKnown RBP6.4□□□□□ -1.38
USP40-202ENST00000409945 TSTD1Q8NFU3 115 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 OR52L2PQ8NGH6 319 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 GLMPQ8WWB7 406 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 CHFRQ96EP1 664 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 HDHD5Q9BXW7 423 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 SLC2A11Q9BYW1 496 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 RXFP3Q9NSD7 469 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 ASB6Q9NWX5 421 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 FZD4Q9ULV1 537 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 STAP1Q9ULZ2 295 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 COPG1Q9Y678 874 aaKnown RBP6.4□□□□□ -1.38
USP40-202ENST00000409945 PIEZO1Q92508 2521 aa6.4□□□□□ -1.38
USP40-202ENST00000409945 KIF26AQ9ULI4 1882 aaPredicted RBP6.4□□□□□ -1.38
USP40-202ENST00000409945 COL4A2P08572 1712 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 EFCAB8A8MWE9 144 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 B8ZZF3 427 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 TULP2O00295 520 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 MDM4O15151 490 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 TIMM44O43615 452 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 CACNG3O60359 315 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 HSF2BPO75031 334 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 LSM8O95777 96 aaKnown RBP6.4□□□□□ -1.39
USP40-202ENST00000409945 SERPINC1P01008 464 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 HOXA6P31267 233 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 GRK5P34947 590 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 MPP1Q00013 466 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 DMC1Q14565 340 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 C10orf76Q5T2E6 689 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 OR6B2Q6IFH4 312 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 ANKRD16Q6P6B7 361 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 GJB7Q6PEY0 223 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 TRIM72Q6ZMU5 477 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 C11orf57Q6ZUT1 292 aaPredicted RBP6.4□□□□□ -1.39
USP40-202ENST00000409945 WDR53Q7Z5U6 358 aaPredicted RBP6.4□□□□□ -1.39
USP40-202ENST00000409945 TFAP2DQ7Z6R9 452 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 TMEM110Q86TL2 294 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 ERICH1Q86X53 443 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 FAM71AQ8IYT1 594 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 ULK2Q8IYT8 1036 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 CPXM2Q8N436 756 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 ATP6V0D2Q8N8Y2 350 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 TERB1Q8NA31 727 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 ARRDC3Q96B67 414 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 TMA16Q96EY4 203 aaKnown RBP6.4□□□□□ -1.39
USP40-202ENST00000409945 FAM207AQ9NSI2 230 aaPredicted RBP6.4□□□□□ -1.39
USP40-202ENST00000409945 ASNSD1Q9NWL6 643 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 OSER1Q9NX31 292 aa6.4□□□□□ -1.39
USP40-202ENST00000409945 LIMA1Q9UHB6 759 aaKnown RBP6.4□□□□□ -1.39
USP40-202ENST00000409945 R4GN57 208 aa6.4□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms