RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 RASAL1O95294 804 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 SIM2Q14190 667 aaPredicted RBP12.7□□□□□ -0.38
COL6A3-206ENST00000409809 ZNF529Q6P280 563 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 ZNF709Q8N972 641 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 SIMC1Q8NDZ2 872 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 LURAP1Q96LR2 239 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 ZNF700Q9H0M5 742 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.7□□□□□ -0.38
COL6A3-206ENST00000409809 C9IYK1 514 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 TPPPO94811 219 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 SOX30O94993 753 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 STAG3L1P0CL83 205 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 PSMA6P60900 246 aaKnown RBP12.7□□□□□ -0.38
COL6A3-206ENST00000409809 SLC45A3Q96JT2 553 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 MTFR1LQ9H019 292 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 LHX5Q9H2C1 402 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 FAM83DQ9H4H8 585 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 FBXO5Q9UKT4 447 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 GNRH1P01148 92 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 RAB4BP61018 213 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 ANKDD1AQ495B1 522 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 KLHL26Q53HC5 615 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 IRAK1BP1Q5VVH5 260 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 PARP8Q8N3A8 854 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 SHC3Q92529 594 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 ZNF486Q96H40 463 aaPredicted RBP12.7□□□□□ -0.38
COL6A3-206ENST00000409809 SECISBP2Q96T21 854 aaKnown RBP12.7□□□□□ -0.38
COL6A3-206ENST00000409809 MIOSQ9NXC5 875 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 MAT2BQ9NZL9 334 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 CIB4A0PJX0 185 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 ZNF208O43345 1280 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 PDX1P52945 283 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 RGS8P57771 180 aaPredicted RBP12.7□□□□□ -0.38
COL6A3-206ENST00000409809 BCL2L1Q07817 233 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 XKR4Q5GH76 650 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 EPHA10Q5JZY3 1008 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 BEND7Q8N7W2 519 aaPredicted RBP12.7□□□□□ -0.38
COL6A3-206ENST00000409809 HAVCR2Q8TDQ0 301 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 NEK7Q8TDX7 302 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 PCBD2Q9H0N5 130 aa12.7□□□□□ -0.38
COL6A3-206ENST00000409809 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.69□□□□□ -0.38
COL6A3-206ENST00000409809 A0A1B0GVM2 712 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 TCAF2A6NFQ2 919 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 GPR182O15218 404 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 XPNPEP2O43895 674 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 GSTM2P28161 218 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 ERVK-8P63133 956 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 MIIPQ5JXC2 388 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 EMC10Q5UCC4 262 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 DET1Q7L5Y6 550 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 C1orf216Q8TAB5 229 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 CYTH4Q9UIA0 394 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 GMPRP36959 345 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 MAP2K3P46734 347 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 GNMTQ14749 295 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 NTRK3Q16288 839 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 COMMD7Q86VX2 200 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 MRPS31Q92665 395 aaKnown RBP12.69□□□□□ -0.38
COL6A3-206ENST00000409809 C3orf49Q96BT1 292 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 A0A0J9YVX5 310 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 GNALP38405 381 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 PBX1P40424 430 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 ANKRD23Q86SG2 305 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 OR4L1Q8NH43 312 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 CPB2Q96IY4 423 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 KANSL3Q9P2N6 904 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 ZNF705EA8MWA4 302 aaPredicted RBP12.69□□□□□ -0.38
COL6A3-206ENST00000409809 CDK2P24941 298 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 CCR10P46092 362 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 KHKP50053 298 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 SLC12A3P55017 1021 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 AP5B1Q2VPB7 878 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 NAPRTQ6XQN6 538 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 PIAS4Q8N2W9 510 aaPredicted RBP12.69□□□□□ -0.38
COL6A3-206ENST00000409809 TRIM43Q96BQ3 446 aaPredicted RBP12.69□□□□□ -0.38
COL6A3-206ENST00000409809 TESMINQ9Y4I5 508 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 MT-ND2P03891 347 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 EIF2DP41214 584 aaKnown RBP12.69□□□□□ -0.38
COL6A3-206ENST00000409809 XKP51811 444 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 C2orf80Q0P641 193 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 RPL13AP3Q6NVV1 102 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 CARM1Q86X55 608 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 OSTF1Q92882 214 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 MECRQ9BV79 373 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 SRRDQ9UH36 339 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 SNX10Q9Y5X0 201 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 DAPL1A0PJW8 107 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 NAP1L6A6NFF2 107 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 HNRNPLP14866 589 aaKnown RBP eCLIP12.69□□□□□ -0.38
COL6A3-206ENST00000409809 NELFEP18615 380 aaKnown RBP12.69□□□□□ -0.38
COL6A3-206ENST00000409809 LRRC55Q6ZSA7 311 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 FBXO33Q7Z6M2 555 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 OR10H4Q8NGA5 316 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 RERGQ96A58 199 aaPredicted RBP12.69□□□□□ -0.38
COL6A3-206ENST00000409809 POLR2J3Q9H1A7 115 aaKnown RBP12.69□□□□□ -0.38
COL6A3-206ENST00000409809 CAPN10Q9HC96 672 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 PACSIN3Q9UKS6 424 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 NOP16Q9Y3C1 178 aaKnown RBP12.69□□□□□ -0.38
COL6A3-206ENST00000409809 A0A0G2JMP0 313 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 A0A1W2PQ67 120 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms