RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 CLDN9O95484 217 aa20.24■□□□□ 0.83
USP39-203ENST00000409470 POLR2JP52435 117 aaKnown RBP20.24■□□□□ 0.83
USP39-203ENST00000409470 CTSCP53634 463 aa20.24■□□□□ 0.83
USP39-203ENST00000409470 RUNX3Q13761 415 aa20.24■□□□□ 0.83
USP39-203ENST00000409470 RCAN2Q14206 197 aa20.24■□□□□ 0.83
USP39-203ENST00000409470 SGO1Q5FBB7 561 aa20.24■□□□□ 0.83
USP39-203ENST00000409470 COQ5Q5HYK3 327 aa20.24■□□□□ 0.83
USP39-203ENST00000409470 ZFP1Q6P2D0 407 aa20.24■□□□□ 0.83
USP39-203ENST00000409470 PRMT9Q6P2P2 845 aa20.24■□□□□ 0.83
USP39-203ENST00000409470 SPATA24Q86W54 205 aa20.24■□□□□ 0.83
USP39-203ENST00000409470 VPS33AQ96AX1 596 aa20.24■□□□□ 0.83
USP39-203ENST00000409470 ERLEC1Q96DZ1 483 aa20.24■□□□□ 0.83
USP39-203ENST00000409470 LRCH3Q96II8 777 aa20.24■□□□□ 0.83
USP39-203ENST00000409470 ZNF184Q99676 751 aaPredicted RBP20.24■□□□□ 0.83
USP39-203ENST00000409470 P2RY13Q9BPV8 354 aa20.24■□□□□ 0.83
USP39-203ENST00000409470 ZNF490Q9ULM2 529 aaPredicted RBP20.24■□□□□ 0.83
USP39-203ENST00000409470 TMEM202A6NGA9 273 aa20.24■□□□□ 0.83
USP39-203ENST00000409470 CCDC154A6NI56 674 aa20.24■□□□□ 0.83
USP39-203ENST00000409470 RFXAPO00287 272 aa20.24■□□□□ 0.83
USP39-203ENST00000409470 SLC28A1O00337 649 aa20.24■□□□□ 0.83
USP39-203ENST00000409470 SLCO2B1O94956 709 aa20.24■□□□□ 0.83
USP39-203ENST00000409470 ADRB3P13945 408 aa20.24■□□□□ 0.83
USP39-203ENST00000409470 CMPK2Q5EBM0 449 aa20.24■□□□□ 0.83
USP39-203ENST00000409470 TMEM159Q96B96 161 aa20.24■□□□□ 0.83
USP39-203ENST00000409470 PCDHAC1Q9H158 963 aa20.24■□□□□ 0.83
USP39-203ENST00000409470 SLC28A3Q9HAS3 691 aa20.24■□□□□ 0.83
USP39-203ENST00000409470 ZDHHC4Q9NPG8 344 aa20.24■□□□□ 0.83
USP39-203ENST00000409470 SLC52A3Q9NQ40 469 aa20.24■□□□□ 0.83
USP39-203ENST00000409470 HEBP1Q9NRV9 189 aa20.24■□□□□ 0.83
USP39-203ENST00000409470 FARSBQ9NSD9 589 aaKnown RBP20.24■□□□□ 0.83
USP39-203ENST00000409470 PSMD13Q9UNM6 376 aa20.24■□□□□ 0.83
USP39-203ENST00000409470 LZTS3O60299 673 aaPredicted RBP20.23■□□□□ 0.83
USP39-203ENST00000409470 RECQL5O94762 991 aaPredicted RBP20.23■□□□□ 0.83
USP39-203ENST00000409470 SLC2A4P14672 509 aa20.23■□□□□ 0.83
USP39-203ENST00000409470 OPRD1P41143 372 aa20.23■□□□□ 0.83
USP39-203ENST00000409470 AP1S2P56377 157 aa20.23■□□□□ 0.83
USP39-203ENST00000409470 ABRQ12979 859 aa20.23■□□□□ 0.83
USP39-203ENST00000409470 IMPG1Q17R60 797 aa20.23■□□□□ 0.83
USP39-203ENST00000409470 IL23RQ5VWK5 629 aa20.23■□□□□ 0.83
USP39-203ENST00000409470 TMEM220Q6QAJ8 160 aa20.23■□□□□ 0.83
USP39-203ENST00000409470 IZUMO2Q6UXV1 221 aa20.23■□□□□ 0.83
USP39-203ENST00000409470 CYP2U1Q7Z449 544 aa20.23■□□□□ 0.83
USP39-203ENST00000409470 MMAAQ8IVH4 418 aaKnown RBP20.23■□□□□ 0.83
USP39-203ENST00000409470 KBTBD2Q8IY47 623 aa20.23■□□□□ 0.83
USP39-203ENST00000409470 NUS1Q96E22 293 aa20.23■□□□□ 0.83
USP39-203ENST00000409470 GPATCH1Q9BRR8 931 aaKnown RBP20.23■□□□□ 0.83
USP39-203ENST00000409470 CCM2Q9BSQ5 444 aa20.23■□□□□ 0.83
USP39-203ENST00000409470 CD300AQ9UGN4 299 aa20.23■□□□□ 0.83
USP39-203ENST00000409470 ZNHIT2Q9UHR6 403 aa20.23■□□□□ 0.83
USP39-203ENST00000409470 POLR3HQ9Y535 204 aaPredicted RBP20.23■□□□□ 0.83
USP39-203ENST00000409470 RANBP2P49792 3224 aaKnown RBP20.23■□□□□ 0.83
USP39-203ENST00000409470 FAM234BA2RU67 622 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 MANBAO00462 879 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 LINC01565O15544 149 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 G6PDP11413 515 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 MAP4P27816 1152 aaKnown RBP20.22■□□□□ 0.83
USP39-203ENST00000409470 GJA4P35212 333 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 IL12RB1P42701 662 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 PRLHRP49683 370 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 FCHO2Q0JRZ9 810 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 NFYCQ13952 458 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 CAPRIN1Q14444 709 aaKnown RBP20.22■□□□□ 0.83
USP39-203ENST00000409470 PTCHD3Q3KNS1 767 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 RFTN2Q52LD8 501 aaPredicted RBP20.22■□□□□ 0.83
USP39-203ENST00000409470 DSG4Q86SJ6 1040 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 HOMEZQ8IX15 550 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 MINDY1Q8N5J2 469 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 PYCR2Q96C36 320 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 LRRC58Q96CX6 371 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 SLC29A3Q9BZD2 475 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 VCX3BQ9H321 246 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 MUC22E2RYF6 1773 aaPredicted RBP20.22■□□□□ 0.83
USP39-203ENST00000409470 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.22■□□□□ 0.83
USP39-203ENST00000409470 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.22■□□□□ 0.83
USP39-203ENST00000409470 AREL1O15033 823 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 MMP20O60882 483 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 EPHX1P07099 455 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 C6P13671 934 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 EPORP19235 508 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 PBLDP30039 288 aaPredicted RBP20.22■□□□□ 0.83
USP39-203ENST00000409470 CASP2P42575 452 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 ZFP36L2P47974 494 aaKnown RBP20.22■□□□□ 0.83
USP39-203ENST00000409470 RPL38P63173 70 aaKnown RBP20.22■□□□□ 0.83
USP39-203ENST00000409470 TRAP1Q12931 704 aaKnown RBP20.22■□□□□ 0.83
USP39-203ENST00000409470 TRIP10Q15642 601 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 CPSF6Q16630 551 aaKnown RBP eCLIP20.22■□□□□ 0.83
USP39-203ENST00000409470 LRRC36Q1X8D7 754 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 RAET1GQ6H3X3 334 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 CYP20A1Q6UW02 462 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 PROKR1Q8TCW9 393 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 PLA2G2FQ9BZM2 168 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 TMEM45AQ9NWC5 275 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 LEF1Q9UJU2 399 aaPredicted RBP20.22■□□□□ 0.83
USP39-203ENST00000409470 CCL27Q9Y4X3 112 aa20.22■□□□□ 0.83
USP39-203ENST00000409470 C5orf42Q9H799 3197 aa20.21■□□□□ 0.83
USP39-203ENST00000409470 KRT87PA6NCN2 255 aa20.21■□□□□ 0.83
USP39-203ENST00000409470 C1QTNF3-AMACRE9PGA6 284 aa20.21■□□□□ 0.83
USP39-203ENST00000409470 EEDO75530 441 aaKnown RBP20.21■□□□□ 0.83
USP39-203ENST00000409470 STAMBPO95630 424 aa20.21■□□□□ 0.83
USP39-203ENST00000409470 KRT6AP02538 564 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms