RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 SPAG4Q9NPE6 437 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 LHX3Q9UBR4 397 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 AP2A2O94973 939 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 TNFP01375 233 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 IGLV3-25P01717 112 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 GSNP06396 782 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 CBSLP0DN79 551 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 CBSP35520 551 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 MSX2P35548 267 aaPredicted RBP8.91□□□□□ -0.98
LIG4-202ENST00000405925 KRT20P35900 424 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 CCT8P50990 548 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 PARS2Q7L3T8 475 aaKnown RBP8.91□□□□□ -0.98
LIG4-202ENST00000405925 R3HCC1LQ7Z5L2 792 aaKnown RBP8.91□□□□□ -0.98
LIG4-202ENST00000405925 SPATA19Q7Z5L4 167 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 DHDDSQ86SQ9 333 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 DSELQ8IZU8 1212 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 BTN2A2Q8WVV5 523 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 NELL1Q92832 810 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 NAF1Q96HR8 494 aaKnown RBP8.91□□□□□ -0.98
LIG4-202ENST00000405925 ASB16Q96NS5 453 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 TXLNGYQ9BZA5 131 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 CCDC134Q9H6E4 229 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 LMAN1LQ9HAT1 526 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 KLHL28Q9NXS3 571 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 TAC3Q9UHF0 121 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 OR1A2Q9Y585 309 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 NUMA1Q14980 2115 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 NPC1O15118 1278 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 SLC35G6P0C7Q6 338 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 VHLP40337 213 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 CCR2P41597 374 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 HNMTP50135 292 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 NFKB2Q00653 900 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 RPL6Q02878 288 aaKnown RBP8.91□□□□□ -0.98
LIG4-202ENST00000405925 C2orf80Q0P641 193 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 VPS26BQ4G0F5 336 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 FAM98BQ52LJ0 330 aaKnown RBP8.91□□□□□ -0.98
LIG4-202ENST00000405925 CPTPQ5TA50 214 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 TRIM40Q6P9F5 258 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 SUSD1Q6UWL2 747 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 PGBD5Q8N414 524 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 CPSF7Q8N684 471 aaKnown RBP8.91□□□□□ -0.98
LIG4-202ENST00000405925 SRFBP1Q8NEF9 429 aaKnown RBP8.91□□□□□ -0.98
LIG4-202ENST00000405925 ZNF555Q8NEP9 628 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 MDGA1Q8NFP4 955 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 FBXO30Q8TB52 745 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 ZNF689Q96CS4 500 aaPredicted RBP8.91□□□□□ -0.98
LIG4-202ENST00000405925 NRBF2Q96F24 287 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 GSDMCQ9BYG8 508 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 PCBD2Q9H0N5 130 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 NOL6Q9H6R4 1146 aaKnown RBP8.91□□□□□ -0.98
LIG4-202ENST00000405925 GMEB2Q9UKD1 530 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 HEBP2Q9Y5Z4 205 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 KNTC1P50748 2209 aa8.91□□□□□ -0.98
LIG4-202ENST00000405925 LOC285095A0A1B0GVY8 99 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 SAC3D1A6NKF1 404 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 ALBP02768 609 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 NDUFS1P28331 727 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 CCR10P46092 362 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 AGTR2P50052 363 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 HTRA4P83105 476 aaPredicted RBP8.9□□□□□ -0.98
LIG4-202ENST00000405925 PRKCQQ04759 706 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 C1orf61Q13536 156 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 PTPRRQ15256 657 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 SLC9B1Q4ZJI4 515 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 ZNF542PQ5EBM4 170 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 OTUD3Q5T2D3 398 aaPredicted RBP8.9□□□□□ -0.98
LIG4-202ENST00000405925 PTCRAQ6ISU1 281 aaPredicted RBP8.9□□□□□ -0.98
LIG4-202ENST00000405925 LIMS2Q7Z4I7 341 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 YTHDF3Q7Z739 585 aaKnown RBP8.9□□□□□ -0.98
LIG4-202ENST00000405925 GPR26Q8NDV2 337 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 SMPDL3AQ92484 453 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 GLMNQ92990 594 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 PKMYT1Q99640 499 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 RAB11FIP5Q9BXF6 653 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 NUSAP1Q9BXS6 441 aaKnown RBP8.9□□□□□ -0.98
LIG4-202ENST00000405925 SLC17A9Q9BYT1 436 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 ARNT2Q9HBZ2 717 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 MRPS30Q9NP92 439 aaKnown RBP8.9□□□□□ -0.98
LIG4-202ENST00000405925 SPATA6Q9NWH7 488 aaPredicted RBP8.9□□□□□ -0.98
LIG4-202ENST00000405925 C1orf109Q9NX04 203 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 CDH22Q9UJ99 828 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 TMCC3Q9ULS5 477 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 CLEC4EQ9ULY5 219 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 PLAGL1Q9UM63 463 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 HS3ST2Q9Y278 367 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 BHMG1C9JSJ3 638 aaPredicted RBP8.9□□□□□ -0.98
LIG4-202ENST00000405925 SAP18O00422 153 aaKnown RBP8.9□□□□□ -0.98
LIG4-202ENST00000405925 EFNA1P20827 205 aaPredicted RBP8.9□□□□□ -0.98
LIG4-202ENST00000405925 FASP25445 335 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 GRIA3P42263 894 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 IL12RB1P42701 662 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 ARRB1P49407 418 aaPredicted RBP8.9□□□□□ -0.98
LIG4-202ENST00000405925 MAPK12P53778 367 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 MANFP55145 182 aaKnown RBP8.9□□□□□ -0.98
LIG4-202ENST00000405925 MANEALQ5VSG8 457 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 ZNF549Q6P9A3 640 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 PARM1Q6UWI2 310 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 DCUN1D3Q8IWE4 304 aa8.9□□□□□ -0.98
LIG4-202ENST00000405925 OR2A12Q8NGT7 310 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms