RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 GRB14Q14449 540 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 NFE2Q16621 373 aaPredicted RBP11.74□□□□□ -0.53
HMGB1-206ENST00000405805 ZNF57Q68EA5 555 aaPredicted RBP11.74□□□□□ -0.53
HMGB1-206ENST00000405805 ERAP2Q6P179 960 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 CLEC14AQ86T13 490 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 ARMC8Q8IUR7 673 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 AKAP1Q92667 903 aaKnown RBP eCLIP11.74□□□□□ -0.53
HMGB1-206ENST00000405805 APOLD1Q96LR9 279 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 SLC2A13Q96QE2 648 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 TSEN34Q9BSV6 310 aaKnown RBP11.74□□□□□ -0.53
HMGB1-206ENST00000405805 TLR8Q9NR97 1041 aaKnown RBP11.74□□□□□ -0.53
HMGB1-206ENST00000405805 TMEM161AQ9NX61 479 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 USE1Q9NZ43 259 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 ZNF222Q9UK12 451 aa11.74□□□□□ -0.53
HMGB1-206ENST00000405805 SAMHD1Q9Y3Z3 626 aaKnown RBP11.74□□□□□ -0.53
HMGB1-206ENST00000405805 GNG14A0A1W2PPG7 69 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 AQP12BA6NM10 295 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 LOC110117498-PIK3R3F6TDL0 507 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 TNFRSF10AO00220 468 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 UBFD1O14562 309 aaKnown RBP11.73□□□□□ -0.53
HMGB1-206ENST00000405805 DFNA5O60443 496 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 MLYCDO95822 493 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 F2P00734 622 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 RPL17P18621 184 aaKnown RBP11.73□□□□□ -0.53
HMGB1-206ENST00000405805 ATN1P54259 1190 aaPredicted RBP11.73□□□□□ -0.53
HMGB1-206ENST00000405805 AIF1P55008 147 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 PFKPQ01813 784 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 FPGSQ05932 587 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 BTG3Q14201 252 aaPredicted RBP11.73□□□□□ -0.53
HMGB1-206ENST00000405805 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.73□□□□□ -0.53
HMGB1-206ENST00000405805 PPP4R4Q6NUP7 873 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 CHERPQ8IWX8 916 aaKnown RBP11.73□□□□□ -0.53
HMGB1-206ENST00000405805 AQP12AQ8IXF9 295 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 ASB2Q96Q27 587 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 GSTO2Q9H4Y5 243 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 GKN1Q9NS71 199 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 MLXQ9UH92 298 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 GREB1LQ9C091 1923 aaPredicted RBP11.73□□□□□ -0.53
HMGB1-206ENST00000405805 FOCADQ5VW36 1801 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 GPR32O75388 356 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 S1PR4O95977 384 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 FUCA1P04066 466 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 SBK3P0C264 359 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 POU2F1P14859 743 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 LPOP22079 712 aaPredicted RBP11.73□□□□□ -0.53
HMGB1-206ENST00000405805 CYP2C18P33260 490 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 BMXP51813 675 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 TRIM32Q13049 653 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 IL18R1Q13478 541 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 EFR3AQ14156 821 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 UGT3A1Q6NUS8 523 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 TPGS1Q6ZTW0 290 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 MON1AQ86VX9 555 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 ADHFE1Q8IWW8 467 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 TRIM48Q8IWZ4 208 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 NKAPQ8N5F7 415 aaKnown RBP11.73□□□□□ -0.53
HMGB1-206ENST00000405805 UXS1Q8NBZ7 420 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 GPR156Q8NFN8 814 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 OR10T2Q8NGX3 314 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 MCOLN3Q8TDD5 553 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 KCTD13Q8WZ19 329 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 MED8Q96G25 268 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 REXO5Q96IC2 774 aaKnown RBP11.73□□□□□ -0.53
HMGB1-206ENST00000405805 PTPN18Q99952 460 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 ADGRE3Q9BY15 652 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 FBXO44Q9H4M3 255 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 TBC1D30Q9Y2I9 924 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 KIAA1217Q5T5P2 1943 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 SAGE2PA6NJ88 616 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 ITPKAP23677 461 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 POLR2IP36954 125 aaKnown RBP11.73□□□□□ -0.53
HMGB1-206ENST00000405805 PGFP49763 221 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 HTR6P50406 440 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 VBP1P61758 197 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 SCRN3Q0VDG4 424 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 TOP3AQ13472 1001 aaPredicted RBP11.73□□□□□ -0.53
HMGB1-206ENST00000405805 GRM2Q14416 872 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 ZMYND11Q15326 602 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 ATXN7L2Q5T6C5 722 aaPredicted RBP11.73□□□□□ -0.53
HMGB1-206ENST00000405805 RAB43Q86YS6 212 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 GRAMD2AQ8IUY3 354 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 CNIH3Q8TBE1 160 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 ITPKCQ96DU7 683 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 EBPLQ9BY08 206 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 CIPCQ9C0C6 399 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 ATG10Q9H0Y0 220 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 ZNF304Q9HCX3 659 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 AGO1Q9UL18 857 aaKnown RBP11.73□□□□□ -0.53
HMGB1-206ENST00000405805 ZNF490Q9ULM2 529 aaPredicted RBP11.73□□□□□ -0.53
HMGB1-206ENST00000405805 HSPB11Q9Y547 144 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 MCM3APO60318 1980 aa11.73□□□□□ -0.53
HMGB1-206ENST00000405805 A0A1W2PP18 115 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 M0QX08 132 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 FGF1P05230 155 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 FAM189BP81408 668 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 LGALS3BPQ08380 585 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 ATAD3BQ5T9A4 648 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 TMEM236Q5W0B7 351 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 FAM20CQ8IXL6 584 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 ZNF597Q96LX8 424 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms