RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 MAPK11Q15759 364 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 EZH2Q15910 746 aaKnown RBP4.02□□□□□ -1.77
HMGB1-204ENST00000399489 SRSF7Q16629 238 aaKnown RBP eCLIP4.02□□□□□ -1.771e-10■■■■□ 20
HMGB1-204ENST00000399489 UGCGQ16739 394 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 CCDC152Q4G0S7 254 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 KIAA0895LQ68EN5 471 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 KCTD11Q693B1 232 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 WBP2NLQ6ICG8 309 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 QSOX2Q6ZRP7 698 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 CAMK1DQ8IU85 385 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 RASGEF1AQ8N9B8 481 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 SPERTQ8NA61 448 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 TMEM185AQ8NFB2 350 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 AKR7LQ8NHP1 331 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 B4GALNT2Q8NHY0 566 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 TRPC4APQ8TEL6 797 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 TFAP2BQ92481 460 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 SNX19Q92543 992 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 FBXO32Q969P5 355 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 MUS81Q96NY9 551 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 FYTTD1Q96QD9 318 aaKnown RBP4.02□□□□□ -1.77
HMGB1-204ENST00000399489 ZBTB18Q99592 522 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 DPCDQ9BVM2 203 aaPredicted RBP4.02□□□□□ -1.77
HMGB1-204ENST00000399489 CADM1Q9BY67 442 aaKnown RBP4.02□□□□□ -1.77
HMGB1-204ENST00000399489 B3GNT4Q9C0J1 378 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 GLOD4Q9HC38 313 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 SLCO1C1Q9NYB5 712 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 LARSQ9P2J5 1176 aaKnown RBP4.02□□□□□ -1.77
HMGB1-204ENST00000399489 TSPAN16Q9UKR8 245 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 FAM96BQ9Y3D0 163 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 DDX49Q9Y6V7 483 aaKnown RBP4.02□□□□□ -1.77
HMGB1-204ENST00000399489 SPATA31A3Q5VYP0 1347 aa4.02□□□□□ -1.77
HMGB1-204ENST00000399489 AKNAQ7Z591 1439 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 TARSL2A2RTX5 802 aaKnown RBP4.01□□□□□ -1.77
HMGB1-204ENST00000399489 SMAD9O15198 467 aaKnown RBP4.01□□□□□ -1.77
HMGB1-204ENST00000399489 POLR2DO15514 142 aaKnown RBP4.01□□□□□ -1.77
HMGB1-204ENST00000399489 LANCL1O43813 399 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 HSF2BPO75031 334 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 DAB1O75553 588 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 CRCPO75575 148 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 IDH1O75874 414 aaKnown RBP4.01□□□□□ -1.77
HMGB1-204ENST00000399489 CXCL10P02778 98 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 S100A9P06702 114 aaKnown RBP4.01□□□□□ -1.77
HMGB1-204ENST00000399489 EPB41P11171 864 aaKnown RBP4.01□□□□□ -1.77
HMGB1-204ENST00000399489 CALB2P22676 271 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 TKTP29401 623 aaKnown RBP4.01□□□□□ -1.77
HMGB1-204ENST00000399489 HSD17B2P37059 387 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 OAZ1P54368 228 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 PRRX1P54821 245 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 MRPS34P82930 218 aaKnown RBP4.01□□□□□ -1.77
HMGB1-204ENST00000399489 ITIH3Q06033 890 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 CCDC173Q0VFZ6 552 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 SNTB2Q13425 540 aaKnown RBP4.01□□□□□ -1.77
HMGB1-204ENST00000399489 PDE7AQ13946 482 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 USP41Q3LFD5 358 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 TCTE1Q5JU00 501 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 C6orf141Q5SZD1 244 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 SUMO4Q6EEV6 95 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 AADACL2Q6P093 401 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 KYAT3Q6YP21 454 aaKnown RBP4.01□□□□□ -1.77
HMGB1-204ENST00000399489 DET1Q7L5Y6 550 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 PIGWQ7Z7B1 504 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 LRRC49Q8IUZ0 686 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 PSTKQ8IV42 348 aaKnown RBP4.01□□□□□ -1.77
HMGB1-204ENST00000399489 SLC22A9Q8IVM8 553 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 PHC2Q8IXK0 858 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 C4orf19Q8IY42 314 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 SRFBP1Q8NEF9 429 aaKnown RBP4.01□□□□□ -1.77
HMGB1-204ENST00000399489 TAS1R2Q8TE23 839 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 SOCS4Q8WXH5 440 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 NSMAFQ92636 917 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 RAD54LQ92698 747 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 SLC25A28Q96A46 364 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 RSPRY1Q96DX4 576 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 TPD52L3Q96J77 140 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 TTC25Q96NG3 672 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 PSKH2Q96QS6 385 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 USP28Q96RU2 1077 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 PLIN2Q99541 437 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 TBC1D10AQ9BXI6 508 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 GPR61Q9BZJ8 451 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 HPS4Q9NQG7 708 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 PANK4Q9NVE7 773 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 UBQLN2Q9UHD9 624 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 TEKT2Q9UIF3 430 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 VPS4AQ9UN37 437 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 PLA2G4CQ9UP65 541 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 B3GNT3Q9Y2A9 372 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 ARAP1Q96P48 1450 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 C15orf38-AP3S2A0A0A6YYH1 394 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 C1orf226A1L170 272 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 KLRF2D3W0D1 207 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 CTDSPLO15194 276 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 CHADO15335 359 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 TEX28O15482 410 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 MED7O43513 233 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 NMT2O60551 498 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 SURF6O75683 361 aaKnown RBP4.01□□□□□ -1.77
HMGB1-204ENST00000399489 ZFPL1O95159 310 aa4.01□□□□□ -1.77
HMGB1-204ENST00000399489 CBX6O95503 412 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms