RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 IKZF3Q9UKT9 509 aa15.84■□□□□ 0.13
PCDH1-203ENST00000394536 SNX6Q9UNH7 406 aa15.84■□□□□ 0.13
PCDH1-203ENST00000394536 ZNF99A8MXY4 864 aaPredicted RBP15.84■□□□□ 0.13
PCDH1-203ENST00000394536 CREG1O75629 220 aa15.84■□□□□ 0.13
PCDH1-203ENST00000394536 INMTO95050 263 aa15.84■□□□□ 0.13
PCDH1-203ENST00000394536 MFN2O95140 757 aa15.84■□□□□ 0.13
PCDH1-203ENST00000394536 ZNF865P0CJ78 1059 aaPredicted RBP15.84■□□□□ 0.13
PCDH1-203ENST00000394536 MATN1P21941 496 aa15.84■□□□□ 0.13
PCDH1-203ENST00000394536 HTR1EP28566 365 aa15.84■□□□□ 0.13
PCDH1-203ENST00000394536 INPP1P49441 399 aa15.84■□□□□ 0.13
PCDH1-203ENST00000394536 DGKEP52429 567 aa15.84■□□□□ 0.13
PCDH1-203ENST00000394536 CACNG1Q06432 222 aa15.84■□□□□ 0.13
PCDH1-203ENST00000394536 RCAN2Q14206 197 aa15.84■□□□□ 0.13
PCDH1-203ENST00000394536 STARD3Q14849 445 aa15.84■□□□□ 0.13
PCDH1-203ENST00000394536 SKIV2LQ15477 1246 aaKnown RBP15.84■□□□□ 0.13
PCDH1-203ENST00000394536 CYBRD1Q53TN4 286 aa15.84■□□□□ 0.13
PCDH1-203ENST00000394536 CES5AQ6NT32 575 aa15.84■□□□□ 0.13
PCDH1-203ENST00000394536 KLHDC9Q8NEP7 349 aa15.84■□□□□ 0.13
PCDH1-203ENST00000394536 DACT3Q96B18 629 aaPredicted RBP15.84■□□□□ 0.13
PCDH1-203ENST00000394536 TSEN34Q9BSV6 310 aaKnown RBP15.84■□□□□ 0.13
PCDH1-203ENST00000394536 FUNDC2Q9BWH2 189 aa15.84■□□□□ 0.13
PCDH1-203ENST00000394536 EPS8L2Q9H6S3 715 aa15.84■□□□□ 0.13
PCDH1-203ENST00000394536 C1orf109Q9NX04 203 aa15.84■□□□□ 0.13
PCDH1-203ENST00000394536 HSFX1Q9UBD0 423 aa15.84■□□□□ 0.13
PCDH1-203ENST00000394536 MITFO75030 526 aaPredicted RBP15.83■□□□□ 0.13
PCDH1-203ENST00000394536 CNOT3O75175 753 aaKnown RBP15.83■□□□□ 0.13
PCDH1-203ENST00000394536 EEDO75530 441 aaKnown RBP15.83■□□□□ 0.13
PCDH1-203ENST00000394536 SCELO95171 688 aa15.83■□□□□ 0.13
PCDH1-203ENST00000394536 MATN4O95460 622 aa15.83■□□□□ 0.13
PCDH1-203ENST00000394536 MTHFD2P13995 350 aa15.83■□□□□ 0.13
PCDH1-203ENST00000394536 FAM189BP81408 668 aa15.83■□□□□ 0.13
PCDH1-203ENST00000394536 ILF2Q12905 390 aaKnown RBP15.83■□□□□ 0.13
PCDH1-203ENST00000394536 TTC29Q8NA56 475 aaPredicted RBP15.83■□□□□ 0.13
PCDH1-203ENST00000394536 PROKR1Q8TCW9 393 aa15.83■□□□□ 0.13
PCDH1-203ENST00000394536 CAPSLQ8WWF8 208 aa15.83■□□□□ 0.13
PCDH1-203ENST00000394536 SOCS4Q8WXH5 440 aa15.83■□□□□ 0.13
PCDH1-203ENST00000394536 OTULINQ96BN8 352 aa15.83■□□□□ 0.13
PCDH1-203ENST00000394536 MIR1-1HGQ9H1L0 117 aa15.83■□□□□ 0.13
PCDH1-203ENST00000394536 NLE1Q9NVX2 485 aaPredicted RBP15.83■□□□□ 0.13
PCDH1-203ENST00000394536 CD84Q9UIB8 345 aa15.83■□□□□ 0.13
PCDH1-203ENST00000394536 PCDHGA8Q9Y5G5 932 aa15.83■□□□□ 0.13
PCDH1-203ENST00000394536 GMEB1Q9Y692 573 aa15.83■□□□□ 0.13
PCDH1-203ENST00000394536 RGS10O43665 173 aa15.83■□□□□ 0.12
PCDH1-203ENST00000394536 MTX2O75431 263 aa15.83■□□□□ 0.12
PCDH1-203ENST00000394536 GJB5O95377 273 aa15.83■□□□□ 0.12
PCDH1-203ENST00000394536 CLDN9O95484 217 aa15.83■□□□□ 0.12
PCDH1-203ENST00000394536 EPOP01588 193 aa15.83■□□□□ 0.12
PCDH1-203ENST00000394536 CD247P20963 164 aa15.83■□□□□ 0.12
PCDH1-203ENST00000394536 EMX2Q04743 252 aa15.83■□□□□ 0.12
PCDH1-203ENST00000394536 CD47Q08722 323 aa15.83■□□□□ 0.12
PCDH1-203ENST00000394536 TMEM236Q5W0B7 351 aa15.83■□□□□ 0.12
PCDH1-203ENST00000394536 OR4F3Q6IEY1 312 aa15.83■□□□□ 0.12
PCDH1-203ENST00000394536 PCSK9Q8NBP7 692 aaKnown RBP15.83■□□□□ 0.12
PCDH1-203ENST00000394536 MYO19Q96H55 970 aa15.83■□□□□ 0.12
PCDH1-203ENST00000394536 SPATA17Q96L03 361 aa15.83■□□□□ 0.12
PCDH1-203ENST00000394536 COPS8Q99627 209 aa15.83■□□□□ 0.12
PCDH1-203ENST00000394536 ZNF385DQ9H6B1 395 aa15.83■□□□□ 0.12
PCDH1-203ENST00000394536 C5orf58C9J3I9 102 aa15.83■□□□□ 0.12
PCDH1-203ENST00000394536 TBX1O43435 398 aa15.83■□□□□ 0.12
PCDH1-203ENST00000394536 ATXN1LP0C7T5 689 aaKnown RBP15.83■□□□□ 0.12
PCDH1-203ENST00000394536 CDH4P55283 916 aa15.83■□□□□ 0.12
PCDH1-203ENST00000394536 DEFA1P59665 94 aa15.83■□□□□ 0.12
PCDH1-203ENST00000394536 DEFA3P59666 94 aa15.83■□□□□ 0.12
PCDH1-203ENST00000394536 SFSWAPQ12872 951 aaKnown RBP15.83■□□□□ 0.12
PCDH1-203ENST00000394536 PDE12Q6L8Q7 609 aaKnown RBP15.83■□□□□ 0.12
PCDH1-203ENST00000394536 ANKS3Q6ZW76 656 aa15.83■□□□□ 0.12
PCDH1-203ENST00000394536 SLC22A15Q8IZD6 547 aa15.83■□□□□ 0.12
PCDH1-203ENST00000394536 FUBP3Q96I24 572 aaKnown RBP eCLIP15.83■□□□□ 0.12
PCDH1-203ENST00000394536 CEP44Q9C0F1 390 aa15.83■□□□□ 0.12
PCDH1-203ENST00000394536 FAIMQ9NVQ4 179 aa15.83■□□□□ 0.12
PCDH1-203ENST00000394536 FAM118AQ9NWS6 357 aa15.83■□□□□ 0.12
PCDH1-203ENST00000394536 OGDHLQ9ULD0 1010 aa15.83■□□□□ 0.12
PCDH1-203ENST00000394536 GLYATL1P3A0A0U1RQE8 302 aa15.82■□□□□ 0.12
PCDH1-203ENST00000394536 TUFMP49411 452 aaKnown RBP15.82■□□□□ 0.12
PCDH1-203ENST00000394536 FCGRTP55899 365 aa15.82■□□□□ 0.12
PCDH1-203ENST00000394536 RFX4Q33E94 735 aa15.82■□□□□ 0.12
PCDH1-203ENST00000394536 RSBN1Q5VWQ0 802 aaPredicted RBP15.82■□□□□ 0.12
PCDH1-203ENST00000394536 ZBTB2Q8N680 514 aa15.82■□□□□ 0.12
PCDH1-203ENST00000394536 C2orf49Q9BVC5 232 aaPredicted RBP15.82■□□□□ 0.12
PCDH1-203ENST00000394536 RRAGCQ9HB90 399 aa15.82■□□□□ 0.12
PCDH1-203ENST00000394536 STARD7Q9NQZ5 370 aa15.82■□□□□ 0.12
PCDH1-203ENST00000394536 STX16O14662 325 aa15.82■□□□□ 0.12
PCDH1-203ENST00000394536 SHMT2P34897 504 aa15.82■□□□□ 0.12
PCDH1-203ENST00000394536 CHI3L1P36222 383 aaPredicted RBP15.82■□□□□ 0.12
PCDH1-203ENST00000394536 BCAP31P51572 246 aa15.82■□□□□ 0.12
PCDH1-203ENST00000394536 PLA2G16P53816 162 aa15.82■□□□□ 0.12
PCDH1-203ENST00000394536 ATN1P54259 1190 aaPredicted RBP15.82■□□□□ 0.12
PCDH1-203ENST00000394536 TPTEP56180 551 aa15.82■□□□□ 0.12
PCDH1-203ENST00000394536 PDCD4Q53EL6 469 aaKnown RBP15.82■□□□□ 0.12
PCDH1-203ENST00000394536 XKR6Q5GH73 641 aa15.82■□□□□ 0.12
PCDH1-203ENST00000394536 ZFAND4Q86XD8 727 aa15.82■□□□□ 0.12
PCDH1-203ENST00000394536 RGL4Q8IZJ4 473 aa15.82■□□□□ 0.12
PCDH1-203ENST00000394536 SGCDQ92629 289 aa15.82■□□□□ 0.12
PCDH1-203ENST00000394536 YTHDF1Q9BYJ9 559 aaKnown RBP15.82■□□□□ 0.12
PCDH1-203ENST00000394536 ITM2CQ9NQX7 267 aa15.82■□□□□ 0.12
PCDH1-203ENST00000394536 TESMINQ9Y4I5 508 aa15.82■□□□□ 0.12
PCDH1-203ENST00000394536 CNTRLQ7Z7A1 2325 aa15.82■□□□□ 0.12
PCDH1-203ENST00000394536 A0A1B0GVM2 712 aa15.82■□□□□ 0.12
PCDH1-203ENST00000394536 CLDN7O95471 211 aa15.82■□□□□ 0.12
PCDH1-203ENST00000394536 IL6P05231 212 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms