RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 TBC1D3LB9A6J9 549 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 K7ESM1 405 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 SGTAO43765 313 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 CHEK2O96017 543 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 FGF4P08620 206 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 TBC1D3HP0C7X1 549 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 DGKEP52429 567 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 INHBCP55103 352 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 MTTPP55157 894 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 PKNOX1P55347 436 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 MRPS35P82673 323 aaKnown RBP17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 TBL3Q12788 808 aaKnown RBP17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 BLMHQ13867 455 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 TBC1D3GQ6DHY5 549 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 TBC1D3CQ6IPX1 549 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 IRGCQ6NXR0 463 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 HEATR4Q86WZ0 1026 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 DEFB107AQ8IZN7 70 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 TBC1D3Q8IZP1 549 aaPredicted RBP17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 ASB11Q8WXH4 323 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 MRGPRX1Q96LB2 322 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 LENG8Q96PV6 779 aaPredicted RBP17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 SLC17A9Q9BYT1 436 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 NUF2Q9BZD4 464 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 S100A14Q9HCY8 104 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 MID1IP1Q9NPA3 183 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 TRAF6Q9Y4K3 522 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 ANGPTL3Q9Y5C1 460 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 TRPM6Q9BX84 2022 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 TCRBV21S2A2A0A5A6 115 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 SIX3O95343 332 aaPredicted RBP17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 CATP04040 527 aaKnown RBP17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 RPIAP49247 311 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 HK3P52790 923 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 CTSCP53634 463 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 CDK3Q00526 305 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 RBBP7Q16576 425 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 WSCD2Q2TBF2 565 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 TMEM259Q4ZIN3 620 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 ZNF648Q5T619 568 aaPredicted RBP17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 DEFB123Q8N688 67 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 HM13Q8TCT9 377 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 NAT14Q8WUY8 206 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 ATL1Q8WXF7 558 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 CLPTM1LQ96KA5 538 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 HGH1Q9BTY7 390 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 TEX101Q9BY14 249 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 MRPL40Q9NQ50 206 aaKnown RBP17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 ARL15Q9NXU5 204 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 ATXN10Q9UBB4 475 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 PCTPQ9UKL6 214 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 NDRG2Q9UN36 371 aaKnown RBP17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 EPHA3P29320 983 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 SESN3P58005 492 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 CHSY3Q70JA7 882 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 LRRTM4Q86VH4 590 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 SPNS2Q8IVW8 549 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 SLC22A15Q8IZD6 547 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 BEND7Q8N7W2 519 aaPredicted RBP17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 DENND6BQ8NEG7 585 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 TRPC4APQ8TEL6 797 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 NRG4Q8WWG1 115 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 GUCD1Q96NT3 240 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 NELL2Q99435 816 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 ZNF184Q99676 751 aaPredicted RBP17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 CCT7Q99832 543 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 NUSAP1Q9BXS6 441 aaKnown RBP17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 SHCBP1LQ9BZQ2 653 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 WDR55Q9H6Y2 383 aaPredicted RBP17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 RMI1Q9H9A7 625 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 EFCAB1Q9HAE3 211 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 MEAF6Q9HAF1 191 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 SGK2Q9HBY8 427 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 ZBTB26Q9HCK0 441 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 OPTCQ9UBM4 332 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 PTBP2Q9UKA9 531 aaKnown RBP17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 ADAMTS6Q9UKP5 1117 aa17.8■□□□□ 0.44
CCDC88C-203ENST00000389856 MYO10Q9HD67 2058 aa17.79■□□□□ 0.44
CCDC88C-203ENST00000389856 LOC100653049A0A140TA62 436 aa17.79■□□□□ 0.44
CCDC88C-203ENST00000389856 SLC5A10A0PJK1 596 aa17.79■□□□□ 0.44
CCDC88C-203ENST00000389856 CHURC1-FNTBB4DL54 471 aa17.79■□□□□ 0.44
CCDC88C-203ENST00000389856 H3BM21 787 aa17.79■□□□□ 0.44
CCDC88C-203ENST00000389856 GFYI3L273 518 aa17.79■□□□□ 0.44
CCDC88C-203ENST00000389856 SDHDO14521 159 aa17.79■□□□□ 0.44
CCDC88C-203ENST00000389856 AZIN1O14977 448 aa17.79■□□□□ 0.44
CCDC88C-203ENST00000389856 KATNA1O75449 491 aa17.79■□□□□ 0.44
CCDC88C-203ENST00000389856 KRT34O76011 436 aa17.79■□□□□ 0.44
CCDC88C-203ENST00000389856 GUCA1CO95843 209 aa17.79■□□□□ 0.44
CCDC88C-203ENST00000389856 OTCP00480 354 aa17.79■□□□□ 0.44
CCDC88C-203ENST00000389856 CCR10P46092 362 aa17.79■□□□□ 0.44
CCDC88C-203ENST00000389856 RPA4Q13156 261 aa17.79■□□□□ 0.44
CCDC88C-203ENST00000389856 IRF4Q15306 451 aa17.79■□□□□ 0.44
CCDC88C-203ENST00000389856 GSTA3Q16772 222 aa17.79■□□□□ 0.44
CCDC88C-203ENST00000389856 Q7L0L9 218 aa17.79■□□□□ 0.44
CCDC88C-203ENST00000389856 SNX32Q86XE0 403 aa17.79■□□□□ 0.44
CCDC88C-203ENST00000389856 PGAM4Q8N0Y7 254 aa17.79■□□□□ 0.44
CCDC88C-203ENST00000389856 OR2T34Q8NGX1 318 aa17.79■□□□□ 0.44
CCDC88C-203ENST00000389856 ZNF382Q96SR6 550 aa17.79■□□□□ 0.44
CCDC88C-203ENST00000389856 CD244Q9BZW8 370 aa17.79■□□□□ 0.44
CCDC88C-203ENST00000389856 BTBD1Q9H0C5 482 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms