RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 RENP00797 406 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 IL1AP01583 271 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 TBC1D3HP0C7X1 549 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 INAFM2P0DMQ5 153 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 JAK1P23458 1154 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 PDHA2P29803 388 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 SSTR1P30872 391 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 HNRNPH3P31942 346 aaKnown RBP-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 TTKP33981 857 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 HSPA4P34932 840 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 GGT5P36269 586 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 RAB1AP62820 205 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 GNB2P62879 340 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 RNASELQ05823 741 aaKnown RBP-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 LGALS3BPQ08380 585 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 HES1Q14469 280 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 DUOXA1Q1HG43 343 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 SOWAHAQ2M3V2 549 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 RSPO1Q2MKA7 263 aaPredicted RBP-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 MMEL1Q495T6 779 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 ZNF311Q5JNZ3 666 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 FAM46CQ5VWP2 391 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 TBC1D3GQ6DHY5 549 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 TBC1D3CQ6IPX1 549 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 CES5AQ6NT32 575 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 C15orf52Q6ZUT6 534 aaKnown RBP-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 IL17RELQ6ZVW7 336 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 NOXA1Q86UR1 476 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 WDFY1Q8IWB7 410 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 RAVER1Q8IY67 606 aaKnown RBP-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 UBQLNLQ8IYU4 475 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 TBC1D3Q8IZP1 549 aaPredicted RBP-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 PARP16Q8N5Y8 322 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 SCAIQ8N9R8 606 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 SLC43A3Q8NBI5 491 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 AGBL3Q8NEM8 1001 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 C1orf162Q8NEQ5 155 aaPredicted RBP-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 OR4C3Q8NH37 302 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 SPATA18Q8TC71 538 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 CLEC4CQ8WTT0 213 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 PSPC1Q8WXF1 523 aaKnown RBP-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 UBXN4Q92575 508 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 GRAMD1AQ96CP6 724 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 OXNAD1Q96HP4 312 aaPredicted RBP-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 ZNF641Q96N77 438 aaPredicted RBP-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 RUFY1Q96T51 708 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 NUP88Q99567 741 aaPredicted RBP-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 TMEM120AQ9BXJ8 343 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 CXorf56Q9H5V9 222 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 SAMSN1Q9NSI8 373 aaKnown RBP-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 MTF2Q9Y483 593 aaPredicted RBP-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 CSNK1G3Q9Y6M4 447 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 LRP4O75096 1905 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 CFAP54Q96N23 3096 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 SVEP1Q4LDE5 3571 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 SZT2Q5T011 3432 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 ESPL1Q14674 2120 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 SPTBN1Q01082 2364 aaKnown RBP-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 SPENQ96T58 3664 aaKnown RBP-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 AKAP6Q13023 2319 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 A0A088AWK7 358 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 A6NN06 94 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 DLGAP1O14490 977 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 SNAP91O60641 907 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 PDE8AO60658 829 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 TFAP2AP05549 437 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 IGKV5-2P06315 115 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 CD22P20273 847 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 NUDT1P36639 197 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 CENPAP49450 140 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 IST1P53990 364 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 COG7P83436 770 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 PLA2G7Q13093 441 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 GRM4Q14833 912 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 GPNMBQ14956 572 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 SAFBQ15424 915 aaKnown RBP eCLIP-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 ZNF77Q15935 545 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 ZNF74Q16587 644 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 HNRNPA1L2Q32P51 320 aaKnown RBP-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 AADACL2Q6P093 401 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 SPINK6Q6UWN8 80 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 PACS1Q6VY07 963 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 STRA8Q7Z7C7 330 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 HMGN2P46Q86SG4 172 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 SYVN1Q86TM6 617 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 MAP7D3Q8IWC1 876 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 GPC2Q8N158 579 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 GLIS1Q8NBF1 620 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 SCCPDHQ8NBX0 429 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 INO80EQ8NBZ0 244 aaPredicted RBP-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 OR6S1Q8NH40 331 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 OR5R1Q8NH85 324 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 CSGALNACT1Q8TDX6 532 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 SNRNP27Q8WVK2 155 aaKnown RBP-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 PCNPQ8WW12 178 aaKnown RBP-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 PHF21AQ96BD5 680 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 LRRC58Q96CX6 371 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 RMI2Q96E14 147 aa-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 ZNF486Q96H40 463 aaPredicted RBP-0.95□□□□□ -2.56
RNU6-540P-201ENST00000384622 SUCLG2Q96I99 432 aa-0.95□□□□□ -2.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms