RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 RASAL1O95294 804 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 S100BP04271 92 aaPredicted RBP13.1□□□□□ -0.31
CCDC3-202ENST00000378839 SERPINA4P29622 427 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 HMOX2P30519 316 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 NEK2P51955 445 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 SLC36A3Q495N2 470 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 GLYATQ6IB77 296 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 GRAMD4Q6IC98 578 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 SULT1C3Q6IMI6 304 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 C22orf39Q6P5X5 142 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 TPRG1Q6ZUI0 275 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 LIX1Q8N485 282 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 RNF175Q8N4F7 328 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 FAM81AQ8TBF8 368 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 UBTD2Q8WUN7 234 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 TRIM15Q9C019 465 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 SUV39H2Q9H5I1 410 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 ZDHHC6Q9H6R6 413 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 LATS2Q9NRM7 1088 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 LSM7Q9UK45 103 aaKnown RBP13.1□□□□□ -0.31
CCDC3-202ENST00000378839 TRIM43BA6NCK2 446 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 K7EPI3 171 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 UGT2B4P06133 528 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 GPIP06744 558 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 TCF3P15923 654 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 LAG3P18627 525 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 RGS4P49798 205 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 PRMT2P55345 433 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 ARHGEF7Q14155 803 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 FAM174BQ3ZCQ3 159 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 SPANXN4Q5MJ08 99 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 ZNF648Q5T619 568 aaPredicted RBP13.09□□□□□ -0.31
CCDC3-202ENST00000378839 TRIM46Q7Z4K8 759 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 GOLM1Q8NBJ4 401 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 BPIFB1Q8TDL5 484 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 TRIM43Q96BQ3 446 aaPredicted RBP13.09□□□□□ -0.31
CCDC3-202ENST00000378839 MCCC1Q96RQ3 725 aaPredicted RBP13.09□□□□□ -0.31
CCDC3-202ENST00000378839 CHID1Q9BWS9 393 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 ACPTQ9BZG2 426 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 LINC00597Q9H2U6 94 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 ANAPC2Q9UJX6 822 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 HS3ST2Q9Y278 367 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 DLGAP4Q9Y2H0 992 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 PPIL1Q9Y3C6 166 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 COMMD3-BMI1R4GMX3 469 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 UNC80Q8N2C7 3258 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 PARNO95453 639 aaKnown RBP13.09□□□□□ -0.31
CCDC3-202ENST00000378839 STAMBPO95630 424 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 C8AP07357 584 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 MERTKQ12866 999 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 PWP1Q13610 501 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 SPATS1Q496A3 300 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 GPR33Q49SQ1 333 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 Q6ZVU0 165 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 USP7Q93009 1102 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 PYCR2Q96C36 320 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 ADI1Q9BV57 179 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 NTMT1Q9BV86 223 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 MTG2Q9H4K7 406 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 PCDHB3Q9Y5E6 796 aa13.09□□□□□ -0.31
CCDC3-202ENST00000378839 MOSPD3O75425 235 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 SNAP29O95721 258 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 PDYNP01213 254 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 SLC5A2P31639 672 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 ANKRD34AQ69YU3 496 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 NEK5Q6P3R8 708 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 DNAJC14Q6Y2X3 702 aaPredicted RBP13.08□□□□□ -0.32
CCDC3-202ENST00000378839 OFCC1Q8IZS5 231 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 SORCS1Q8WY21 1168 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 GALNT8Q9NY28 637 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 ZDHHC3Q9NYG2 299 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 B4GALT6Q9UBX8 382 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 ZNF639Q9UID6 485 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 PADI4Q9UM07 663 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 PDE4DIPQ5VU43 2346 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 IGLV3-16A0A075B6K0 115 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 SGTAO43765 313 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 TACR1P25103 407 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 ALDH3B2P48448 385 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 CTBSQ01459 385 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 CPSF6Q16630 551 aaKnown RBP eCLIP13.08□□□□□ -0.32
CCDC3-202ENST00000378839 USP39Q53GS9 565 aaKnown RBP13.08□□□□□ -0.32
CCDC3-202ENST00000378839 CYBRD1Q53TN4 286 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 ENPP6Q6UWR7 440 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 BEND7Q8N7W2 519 aaPredicted RBP13.08□□□□□ -0.32
CCDC3-202ENST00000378839 FOXJ1Q92949 421 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 SCAMP4Q969E2 229 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 RNF145Q96MT1 663 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 BRD9Q9H8M2 597 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 RDH14Q9HBH5 336 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 LTB4R2Q9NPC1 389 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 PNPLA3Q9NST1 481 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 PRRC2BQ5JSZ5 2229 aaKnown RBP13.08□□□□□ -0.32
CCDC3-202ENST00000378839 KCNE1BA0A087WTH5 132 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 TRAV19A0A0A6YYK7 116 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 ABHD14A-ACY1A0A1B0GW23 586 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 HIDE1A8MVS5 230 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 CTSAP10619 480 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 PCNAP12004 261 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 MYF6P23409 242 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms