RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 CAV1Q03135 178 aa13□□□□□ -0.33
VPS28-202ENST00000377348 CBLBQ13191 982 aa13□□□□□ -0.33
VPS28-202ENST00000377348 PLEKHS1Q5SXH7 462 aa13□□□□□ -0.33
VPS28-202ENST00000377348 FAM92BQ6ZTR7 304 aa13□□□□□ -0.33
VPS28-202ENST00000377348 ARHGAP22Q7Z5H3 698 aa13□□□□□ -0.33
VPS28-202ENST00000377348 PLXDC1Q8IUK5 500 aa13□□□□□ -0.33
VPS28-202ENST00000377348 ZBTB2Q8N680 514 aa13□□□□□ -0.33
VPS28-202ENST00000377348 CEP112Q8N8E3 955 aa13□□□□□ -0.33
VPS28-202ENST00000377348 LRRN4CLQ8ND94 238 aa13□□□□□ -0.33
VPS28-202ENST00000377348 GIMAP7Q8NHV1 300 aa13□□□□□ -0.33
VPS28-202ENST00000377348 GSDMBQ8TAX9 411 aa13□□□□□ -0.33
VPS28-202ENST00000377348 ZFPM2Q8WW38 1151 aa13□□□□□ -0.33
VPS28-202ENST00000377348 SEC14L1Q92503 715 aa13□□□□□ -0.33
VPS28-202ENST00000377348 C9orf72Q96LT7 481 aa13□□□□□ -0.33
VPS28-202ENST00000377348 CMKLR1Q99788 373 aa13□□□□□ -0.33
VPS28-202ENST00000377348 CCDC68Q9H2F9 335 aa13□□□□□ -0.33
VPS28-202ENST00000377348 ZDHHC18Q9NUE0 388 aa13□□□□□ -0.33
VPS28-202ENST00000377348 HRASLS2Q9NWW9 162 aa13□□□□□ -0.33
VPS28-202ENST00000377348 OCIAD1Q9NX40 245 aa13□□□□□ -0.33
VPS28-202ENST00000377348 PCDHGA8Q9Y5G5 932 aa13□□□□□ -0.33
VPS28-202ENST00000377348 ANKRD11Q6UB99 2663 aaPredicted RBP13□□□□□ -0.33
VPS28-202ENST00000377348 ACACAQ13085 2346 aa12.99□□□□□ -0.33
VPS28-202ENST00000377348 KPNA5O15131 536 aa12.99□□□□□ -0.33
VPS28-202ENST00000377348 EIF3HO15372 352 aaKnown RBP eCLIP12.99□□□□□ -0.33
VPS28-202ENST00000377348 TLX3O43711 291 aaPredicted RBP12.99□□□□□ -0.33
VPS28-202ENST00000377348 JMJD7P0C870 316 aa12.99□□□□□ -0.33
VPS28-202ENST00000377348 SSTR1P30872 391 aa12.99□□□□□ -0.33
VPS28-202ENST00000377348 CLCN7P51798 805 aa12.99□□□□□ -0.33
VPS28-202ENST00000377348 MAPK10P53779 464 aa12.99□□□□□ -0.33
VPS28-202ENST00000377348 EIF3IQ13347 325 aaKnown RBP12.99□□□□□ -0.33
VPS28-202ENST00000377348 TRA2AQ13595 282 aaKnown RBP eCLIP12.99□□□□□ -0.33
VPS28-202ENST00000377348 CUL1Q13616 776 aa12.99□□□□□ -0.33
VPS28-202ENST00000377348 GBX1Q14549 363 aa12.99□□□□□ -0.33
VPS28-202ENST00000377348 ACSBG2Q5FVE4 666 aa12.99□□□□□ -0.33
VPS28-202ENST00000377348 RBM20Q5T481 1227 aaKnown RBP12.99□□□□□ -0.33
VPS28-202ENST00000377348 OOSP2Q86WS3 158 aa12.99□□□□□ -0.33
VPS28-202ENST00000377348 PALM2Q8IXS6 379 aa12.99□□□□□ -0.33
VPS28-202ENST00000377348 TBC1D21Q8IYX1 336 aa12.99□□□□□ -0.33
VPS28-202ENST00000377348 LMNTD1Q8N9Z9 388 aa12.99□□□□□ -0.33
VPS28-202ENST00000377348 KDF1Q8NAX2 398 aaPredicted RBP12.99□□□□□ -0.33
VPS28-202ENST00000377348 OR5K2Q8NHB8 316 aa12.99□□□□□ -0.33
VPS28-202ENST00000377348 SKA2Q8WVK7 121 aaPredicted RBP12.99□□□□□ -0.33
VPS28-202ENST00000377348 LCN9Q8WX39 176 aa12.99□□□□□ -0.33
VPS28-202ENST00000377348 PPM1MQ96MI6 270 aa12.99□□□□□ -0.33
VPS28-202ENST00000377348 SLC46A1Q96NT5 459 aa12.99□□□□□ -0.33
VPS28-202ENST00000377348 GPR21Q99679 349 aa12.99□□□□□ -0.33
VPS28-202ENST00000377348 AARSD1Q9BTE6 412 aaKnown RBP12.99□□□□□ -0.33
VPS28-202ENST00000377348 TRIT1Q9H3H1 467 aaKnown RBP12.99□□□□□ -0.33
VPS28-202ENST00000377348 SRMSQ9H3Y6 488 aa12.99□□□□□ -0.33
VPS28-202ENST00000377348 ASCL3Q9NQ33 180 aa12.99□□□□□ -0.33
VPS28-202ENST00000377348 SMYD2Q9NRG4 433 aa12.99□□□□□ -0.33
VPS28-202ENST00000377348 MOCS1Q9NZB8 636 aa12.99□□□□□ -0.33
VPS28-202ENST00000377348 AKAP7Q9P0M2 348 aaPredicted RBP12.99□□□□□ -0.33
VPS28-202ENST00000377348 EPHA6Q9UF33 1036 aa12.99□□□□□ -0.33
VPS28-202ENST00000377348 ICKQ9UPZ9 632 aa12.99□□□□□ -0.33
VPS28-202ENST00000377348 PSAT1Q9Y617 370 aa12.99□□□□□ -0.33
VPS28-202ENST00000377348 KRT87PA6NCN2 255 aa12.98□□□□□ -0.33
VPS28-202ENST00000377348 TMEM8BA6NDV4 472 aa12.98□□□□□ -0.33
VPS28-202ENST00000377348 EFCAB7A8K855 629 aa12.98□□□□□ -0.33
VPS28-202ENST00000377348 BTN3A3O00478 584 aa12.98□□□□□ -0.33
VPS28-202ENST00000377348 HGSO14964 777 aaPredicted RBP12.98□□□□□ -0.33
VPS28-202ENST00000377348 RASSF9O75901 435 aa12.98□□□□□ -0.33
VPS28-202ENST00000377348 FGF3P11487 239 aaPredicted RBP12.98□□□□□ -0.33
VPS28-202ENST00000377348 RBMS1P29558 406 aaKnown RBP12.98□□□□□ -0.33
VPS28-202ENST00000377348 CSTF2P33240 577 aaKnown RBP eCLIP12.98□□□□□ -0.33
VPS28-202ENST00000377348 MAGEA4P43358 317 aa12.98□□□□□ -0.33
VPS28-202ENST00000377348 BDKRB1P46663 353 aa12.98□□□□□ -0.33
VPS28-202ENST00000377348 SEPHS1P49903 392 aa12.98□□□□□ -0.33
VPS28-202ENST00000377348 PGGT1BP53609 377 aa12.98□□□□□ -0.33
VPS28-202ENST00000377348 GPX6P59796 221 aa12.98□□□□□ -0.33
VPS28-202ENST00000377348 TIAL1Q01085 375 aaKnown RBP eCLIP12.98□□□□□ -0.33
VPS28-202ENST00000377348 MGAT5Q09328 741 aa12.98□□□□□ -0.33
VPS28-202ENST00000377348 FRG1Q14331 258 aaKnown RBP12.98□□□□□ -0.33
VPS28-202ENST00000377348 ST3GAL2Q16842 350 aa12.98□□□□□ -0.33
VPS28-202ENST00000377348 DNTTIP2Q5QJE6 756 aaKnown RBP12.98□□□□□ -0.33
VPS28-202ENST00000377348 CACHD1Q5VU97 1274 aa12.98□□□□□ -0.33
VPS28-202ENST00000377348 KLHL35Q6PF15 583 aa12.98□□□□□ -0.33
VPS28-202ENST00000377348 FBXO38Q6PIJ6 1188 aa12.98□□□□□ -0.33
VPS28-202ENST00000377348 KIAA0408Q6ZU52 694 aa12.98□□□□□ -0.33
VPS28-202ENST00000377348 PROSER1Q86XN7 944 aa12.98□□□□□ -0.33
VPS28-202ENST00000377348 FAM129CQ86XR2 697 aa12.98□□□□□ -0.33
VPS28-202ENST00000377348 AGBL5Q8NDL9 886 aa12.98□□□□□ -0.33
VPS28-202ENST00000377348 GABPB2Q8TAK5 448 aaPredicted RBP12.98□□□□□ -0.33
VPS28-202ENST00000377348 IFT81Q8WYA0 676 aa12.98□□□□□ -0.33
VPS28-202ENST00000377348 KCNJ9Q92806 393 aa12.98□□□□□ -0.33
VPS28-202ENST00000377348 PMEPA1Q969W9 287 aa12.98□□□□□ -0.33
VPS28-202ENST00000377348 MAP3K3Q99759 626 aa12.98□□□□□ -0.33
VPS28-202ENST00000377348 RAB33BQ9H082 229 aa12.98□□□□□ -0.33
VPS28-202ENST00000377348 TFB2MQ9H5Q4 396 aaKnown RBP12.98□□□□□ -0.33
VPS28-202ENST00000377348 LATS2Q9NRM7 1088 aa12.98□□□□□ -0.33
VPS28-202ENST00000377348 ZFATQ9P243 1243 aa12.98□□□□□ -0.33
VPS28-202ENST00000377348 DKK4Q9UBT3 224 aa12.98□□□□□ -0.33
VPS28-202ENST00000377348 ZMIZ1Q9ULJ6 1067 aa12.98□□□□□ -0.33
VPS28-202ENST00000377348 RAXQ9Y2V3 346 aa12.98□□□□□ -0.33
VPS28-202ENST00000377348 IGHV5-51A0A0C4DH38 117 aa12.97□□□□□ -0.33
VPS28-202ENST00000377348 BTN3A1O00481 513 aa12.97□□□□□ -0.33
VPS28-202ENST00000377348 DXOO77932 396 aaKnown RBP12.97□□□□□ -0.33
VPS28-202ENST00000377348 ITGA2BP08514 1039 aa12.97□□□□□ -0.33
VPS28-202ENST00000377348 KPNA2P52292 529 aaKnown RBP12.97□□□□□ -0.33
VPS28-202ENST00000377348 CDKN2DP55273 166 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms