RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 HOXC8P31273 242 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 GJA8P48165 433 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 GSSP48637 474 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 MORN1Q5T089 497 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 LRRC8DQ7L1W4 858 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 MON1AQ86VX9 555 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 GALNT13Q8IUC8 556 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 CHPFQ8IZ52 775 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 ITCHQ96J02 903 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 SLIRPQ9GZT3 109 aaKnown RBP20.74■□□□□ 0.91
UPF3A-202ENST00000375299 ZNF229Q9UJW7 825 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 ERVK-11Q9UQG0 969 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 AP3M1Q9Y2T2 418 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 PLXNA3P51805 1871 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 MOXD2PA6NHM9 499 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 SERPINA1P01009 418 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 POMCP01189 267 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 CD9P21926 228 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 SERPINB1P30740 379 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 ST13P50502 369 aaKnown RBP20.74■□□□□ 0.91
UPF3A-202ENST00000375299 HNRNPFP52597 415 aaKnown RBP20.74■□□□□ 0.91
UPF3A-202ENST00000375299 PPP5CP53041 499 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 CDC20Q12834 499 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 IRF5Q13568 498 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 PCBP2Q15366 365 aaKnown RBP eCLIP20.74■□□□□ 0.91
UPF3A-202ENST00000375299 C18orf21Q32NC0 220 aaPredicted RBP20.74■□□□□ 0.91
UPF3A-202ENST00000375299 CATSPEREQ5SY80 951 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 LAIR1Q6GTX8 287 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 PSAPL1Q6NUJ1 521 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 DET1Q7L5Y6 550 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 CYP2U1Q7Z449 544 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 ARMC8Q8IUR7 673 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 LGI2Q8N0V4 545 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 DACH2Q96NX9 599 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 SCN3BQ9NY72 215 aa20.74■□□□□ 0.91
UPF3A-202ENST00000375299 EIF3LQ9Y262 564 aaKnown RBP20.74■□□□□ 0.91
UPF3A-202ENST00000375299 TDRD15B5MCY1 1934 aaKnown RBP20.73■□□□□ 0.91
UPF3A-202ENST00000375299 FAM220BPB1ANY3 271 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 OR1I1O60431 355 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 MT-ND2P03891 347 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 CXCR4P61073 352 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 EFEMP1Q12805 493 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 MAP2K5Q13163 448 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 GTF2H2Q13888 395 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 DGCR6Q14129 220 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 TAF1AQ15573 450 aaPredicted RBP20.73■□□□□ 0.91
UPF3A-202ENST00000375299 TRIP4Q15650 581 aaPredicted RBP20.73■□□□□ 0.91
UPF3A-202ENST00000375299 VARS2Q5ST30 1063 aaKnown RBP20.73■□□□□ 0.91
UPF3A-202ENST00000375299 GTF2H2CQ6P1K8 395 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 SHQ1Q6PI26 577 aaKnown RBP20.73■□□□□ 0.91
UPF3A-202ENST00000375299 GALNT5Q7Z7M9 940 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 MDGA1Q8NFP4 955 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 RHOXF1Q8NHV9 184 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 RPRD1AQ96P16 312 aaPredicted RBP20.73■□□□□ 0.91
UPF3A-202ENST00000375299 CTRCQ99895 268 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 DSN1Q9H410 356 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 CPNE5Q9HCH3 593 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 SCML2Q9UQR0 700 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 RBMX2Q9Y388 322 aaKnown RBP20.73■□□□□ 0.91
UPF3A-202ENST00000375299 CCL27Q9Y4X3 112 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 DOCK3Q8IZD9 2030 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 DRGXA6NNA5 263 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 IL1RNP18510 177 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 OR1E1P30953 314 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 PCYT1AP49585 367 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 HUNKP57058 714 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 YBEYP58557 167 aaPredicted RBP20.73■□□□□ 0.91
UPF3A-202ENST00000375299 MRPS6P82932 125 aaKnown RBP20.73■□□□□ 0.91
UPF3A-202ENST00000375299 SPANXN4Q5MJ08 99 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 ALG1LQ6GMV1 187 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 PAGE2Q7Z2X7 111 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 LACC1Q8IV20 430 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 PIANPQ8IYJ0 282 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 PHACTR4Q8IZ21 702 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 SVOPQ8N4V2 548 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 KATNAL1Q9BW62 490 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 DPY30Q9C005 99 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 AP5M1Q9H0R1 490 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 GABARAPL1Q9H0R8 117 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 SP140LQ9H930 580 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 PDFQ9HBH1 243 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 VNN3Q9NY84 501 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 TNPO3Q9Y5L0 923 aaKnown RBP20.73■□□□□ 0.91
UPF3A-202ENST00000375299 HSPE1-MOB4S4R3N1 261 aa20.73■□□□□ 0.91
UPF3A-202ENST00000375299 RECQL5O94762 991 aaPredicted RBP20.72■□□□□ 0.91
UPF3A-202ENST00000375299 FADS2O95864 444 aaKnown RBP20.72■□□□□ 0.91
UPF3A-202ENST00000375299 OR4Q2P0C623 313 aa20.72■□□□□ 0.91
UPF3A-202ENST00000375299 EIF2DP41214 584 aaKnown RBP20.72■□□□□ 0.91
UPF3A-202ENST00000375299 KEAP1Q14145 624 aa20.72■□□□□ 0.91
UPF3A-202ENST00000375299 GTDC1Q4AE62 458 aa20.72■□□□□ 0.91
UPF3A-202ENST00000375299 SDHAF4Q5VUM1 108 aa20.72■□□□□ 0.91
UPF3A-202ENST00000375299 CAPN13Q6MZZ7 669 aaPredicted RBP20.72■□□□□ 0.91
UPF3A-202ENST00000375299 GCNT7Q6ZNI0 430 aa20.72■□□□□ 0.91
UPF3A-202ENST00000375299 GLB1L3Q8NCI6 653 aaPredicted RBP20.72■□□□□ 0.91
UPF3A-202ENST00000375299 NETO1Q8TDF5 533 aa20.72■□□□□ 0.91
UPF3A-202ENST00000375299 RMDN1Q96DB5 314 aa20.72■□□□□ 0.91
UPF3A-202ENST00000375299 RIBC2Q9H4K1 309 aa20.72■□□□□ 0.91
UPF3A-202ENST00000375299 AASSQ9UDR5 926 aa20.72■□□□□ 0.91
UPF3A-202ENST00000375299 ZBBXA8MT70 800 aa20.72■□□□□ 0.91
UPF3A-202ENST00000375299 M0QZ92 97 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms