RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 THOC1Q96FV9 657 aaKnown RBP4.8□□□□□ -1.64
USP48-202ENST00000374730 SMARCD1Q96GM5 515 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 NSL1Q96IY1 281 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 SLC46A1Q96NT5 459 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 TAAR9Q96RI9 348 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 VAT1Q99536 393 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 LGMNQ99538 433 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 MED10Q9BTT4 135 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 TRIM62Q9BVG3 475 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 TBC1D10AQ9BXI6 508 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 TMEM120AQ9BXJ8 343 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 MAGEB5Q9BZ81 275 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 ULBP1Q9BZM6 244 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 WWP1Q9H0M0 922 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 GBA3Q9H227 469 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 STN1Q9H668 368 aaKnown RBP4.8□□□□□ -1.64
USP48-202ENST00000374730 YY1AP1Q9H869 796 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 UGT1A7Q9HAW7 530 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 UGT1A10Q9HAW8 530 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 UGT1A8Q9HAW9 530 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 KCNK13Q9HB14 408 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 CSNK1G1Q9HCP0 422 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 SERHLQ9NQF3 203 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 PIGVQ9NUD9 493 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 DDX43Q9NXZ2 648 aaKnown RBP4.8□□□□□ -1.64
USP48-202ENST00000374730 DKK3Q9UBP4 350 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 HAO1Q9UJM8 370 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 FBXW11Q9UKB1 542 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 HBS1LQ9Y450 684 aaKnown RBP4.8□□□□□ -1.64
USP48-202ENST00000374730 PLEKHM1Q9Y4G2 1056 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 RPS6KL1Q9Y6S9 549 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 BPTFQ12830 3046 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 GREB1Q4ZG55 1949 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 THSD7BQ9C0I4 1608 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 A0A0G2JND7 137 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 ARHGEF37A1IGU5 675 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 MYBPHLA2RUH7 354 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 ARL5CA6NH57 179 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 YJEFN3A6XGL0 299 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 A8MUI8 341 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 TARM1B6A8C7 271 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 I6L893 689 aaPredicted RBP4.79□□□□□ -1.64
USP48-202ENST00000374730 M0QZQ0 153 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 AP3B1O00203 1094 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 FCHO1O14526 889 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 CAPN9O14815 690 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 INPPL1O15357 1258 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 PSMD3O43242 534 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 CACNG3O60359 315 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 PLIN3O60664 434 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 CCDC22O60826 627 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 PEX11AO75192 247 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 USP1O94782 785 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 CBX6O95503 412 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 ONECUT2O95948 504 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 GSRP00390 522 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 ALDOAP04075 364 aaKnown RBP4.79□□□□□ -1.64
USP48-202ENST00000374730 POLBP06746 335 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 HNRNPCP07910 306 aaKnown RBP eCLIP4.79□□□□□ -1.64
USP48-202ENST00000374730 ITGA2BP08514 1039 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 MYL2P10916 166 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 ODC1P11926 461 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 NEFHP12036 1026 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 CYBAP13498 195 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 NDUFB7P17568 137 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 CYP2B6P20813 491 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 PTPN3P26045 913 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 GP5P40197 560 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 VIPR2P41587 438 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 ABCG1P45844 678 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 NPY2RP49146 381 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 PPM1FP49593 454 aaPredicted RBP4.79□□□□□ -1.64
USP48-202ENST00000374730 SERPINB8P50452 374 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 CLCNKBP51801 687 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 ZNF134P52741 427 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 CSE1LP55060 971 aaKnown RBP4.79□□□□□ -1.64
USP48-202ENST00000374730 HUNKP57058 714 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 SOX8P57073 446 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 MAP3K7CLP57077 242 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 COG7P83436 770 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 ZBTB16Q05516 673 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 BTKQ06187 659 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 OVGP1Q12889 678 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 GRIK3Q13003 919 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 NME3Q13232 169 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 EIF4EBP2Q13542 120 aaPredicted RBP4.79□□□□□ -1.64
USP48-202ENST00000374730 CHI3L2Q15782 390 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 UPP1Q16831 310 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 AARS2Q5JTZ9 985 aaKnown RBP4.79□□□□□ -1.64
USP48-202ENST00000374730 ATAT1Q5SQI0 421 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 GRTP1Q5TC63 336 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 ARMC3Q5W041 872 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 KCTD11Q693B1 232 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 PM20D1Q6GTS8 502 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 FAM171BQ6P995 826 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 TLDC1Q6P9B6 456 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 LAYNQ6UX15 382 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 DSTYKQ6XUX3 929 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 TMEM135Q86UB9 458 aa4.79□□□□□ -1.64
USP48-202ENST00000374730 LONP2Q86WA8 852 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms