RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 GRIN2CQ14957 1233 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 Q4G0T1 1027 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 C6orf141Q5SZD1 244 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 C17orf107Q6ZR85 190 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 ASB18Q6ZVZ8 466 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 USP49Q70CQ1 688 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 OAFQ86UD1 273 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 GPALPP1Q8IXQ4 340 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 ST13P4Q8IZP2 240 aaPredicted RBP4.03□□□□□ -1.76
USH2A-202ENST00000366942 SPATA6LQ8N4H0 392 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 POC5Q8NA72 575 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 OR56A4Q8NGH8 313 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 THAP4Q8WY91 577 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 PMM1Q92871 262 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 TCEAL3Q969E4 200 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 IGSF8Q969P0 613 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 SGF29Q96ES7 293 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 CMTM3Q96MX0 182 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 LPIN3Q9BQK8 851 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 C17orf80Q9BSJ5 609 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 TKTL2Q9H0I9 626 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 ADAP2Q9NPF8 381 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 AGPAT5Q9NUQ2 364 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 CKLFQ9UBR5 152 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 CHKBQ9Y259 395 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 HCFC2Q9Y5Z7 792 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 ACTL7BQ9Y614 415 aa4.03□□□□□ -1.76
USH2A-202ENST00000366942 GOLGA4Q13439 2230 aaKnown RBP4.03□□□□□ -1.76
USH2A-202ENST00000366942 A0A0A0MRY4 1105 aa4.03□□□□□ -1.77
USH2A-202ENST00000366942 A0A0A6YYK5 440 aaPredicted RBP4.03□□□□□ -1.77
USH2A-202ENST00000366942 SH3PXD2BA1X283 911 aa4.03□□□□□ -1.77
USH2A-202ENST00000366942 DSCR3O14972 297 aa4.03□□□□□ -1.77
USH2A-202ENST00000366942 ALOX15BO15296 676 aa4.03□□□□□ -1.77
USH2A-202ENST00000366942 PLOD3O60568 738 aa4.03□□□□□ -1.77
USH2A-202ENST00000366942 TSPAN1O60635 241 aa4.03□□□□□ -1.77
USH2A-202ENST00000366942 NR2C2P49116 596 aa4.03□□□□□ -1.77
USH2A-202ENST00000366942 ARPC4P59998 168 aa4.03□□□□□ -1.77
USH2A-202ENST00000366942 TMPRSS15P98073 1019 aa4.03□□□□□ -1.77
USH2A-202ENST00000366942 GUCY1A3Q02108 690 aa4.03□□□□□ -1.77
USH2A-202ENST00000366942 SERTAD2Q14140 314 aa4.03□□□□□ -1.77
USH2A-202ENST00000366942 FASTKD3Q14CZ7 662 aaKnown RBP4.03□□□□□ -1.77
USH2A-202ENST00000366942 MAD2L1BPQ15013 274 aaPredicted RBP4.03□□□□□ -1.77
USH2A-202ENST00000366942 NCF4Q15080 339 aa4.03□□□□□ -1.77
USH2A-202ENST00000366942 MPPED2Q15777 294 aa4.03□□□□□ -1.77
USH2A-202ENST00000366942 STK11Q15831 433 aa4.03□□□□□ -1.77
USH2A-202ENST00000366942 B3GNTL1Q67FW5 361 aaPredicted RBP4.03□□□□□ -1.77
USH2A-202ENST00000366942 TMEM26Q6ZUK4 368 aa4.03□□□□□ -1.77
USH2A-202ENST00000366942 GAREM2Q75VX8 874 aa4.03□□□□□ -1.77
USH2A-202ENST00000366942 FAM131BQ86XD5 332 aa4.03□□□□□ -1.77
USH2A-202ENST00000366942 FAM133AQ8N9E0 248 aa4.03□□□□□ -1.77
USH2A-202ENST00000366942 DENND6BQ8NEG7 585 aa4.03□□□□□ -1.77
USH2A-202ENST00000366942 HPS1Q92902 700 aa4.03□□□□□ -1.77
USH2A-202ENST00000366942 FGF13Q92913 245 aa4.03□□□□□ -1.77
USH2A-202ENST00000366942 SPATA13Q96N96 652 aa4.03□□□□□ -1.77
USH2A-202ENST00000366942 CYTH2Q99418 400 aa4.03□□□□□ -1.77
USH2A-202ENST00000366942 NXF3Q9H4D5 531 aaKnown RBP4.03□□□□□ -1.77
USH2A-202ENST00000366942 CHMP1AQ9HD42 196 aaPredicted RBP4.03□□□□□ -1.77
USH2A-202ENST00000366942 ARFGAP3Q9NP61 516 aa4.03□□□□□ -1.77
USH2A-202ENST00000366942 WASH6PQ9NQA3 447 aa4.03□□□□□ -1.77
USH2A-202ENST00000366942 AVENQ9NQS1 362 aaPredicted RBP4.03□□□□□ -1.77
USH2A-202ENST00000366942 DIABLOQ9NR28 239 aa4.03□□□□□ -1.77
USH2A-202ENST00000366942 PAQR5Q9NXK6 330 aaPredicted RBP4.03□□□□□ -1.77
USH2A-202ENST00000366942 SMIM28A0A1B0GU29 152 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 BTNL10A8MVZ5 291 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 GPR171O14626 319 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 LSM1O15116 133 aaKnown RBP4.02□□□□□ -1.77
USH2A-202ENST00000366942 DDAH2O95865 285 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 HSMCR30P0CW71 290 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 SELEP16581 610 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 SERPINH1P50454 418 aaKnown RBP4.02□□□□□ -1.77
USH2A-202ENST00000366942 RHAGQ02094 409 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 HHEXQ03014 270 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 MAPK7Q13164 816 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 GBX1Q14549 363 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 MFSD13AQ14CX5 517 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 DUSP6Q16828 381 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 CYP51A1Q16850 503 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 NRN1LQ496H8 165 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 ZC3H12AQ5D1E8 599 aaKnown RBP4.02□□□□□ -1.77
USH2A-202ENST00000366942 PPP1R26Q5T8A7 1209 aaPredicted RBP4.02□□□□□ -1.77
USH2A-202ENST00000366942 RAET1LQ5VY80 246 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 DENND1BQ6P3S1 775 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 ZNF793Q6ZN11 406 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 ZNF417Q8TAU3 575 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 FAM172AQ8WUF8 416 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 ALG3Q92685 438 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 RNF25Q96BH1 459 aaPredicted RBP4.02□□□□□ -1.77
USH2A-202ENST00000366942 ELSPBP1Q96BH3 223 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 LCORQ96JN0 433 aaPredicted RBP4.02□□□□□ -1.77
USH2A-202ENST00000366942 ZNF587Q96SQ5 575 aaPredicted RBP4.02□□□□□ -1.77
USH2A-202ENST00000366942 KLF6Q99612 283 aaPredicted RBP4.02□□□□□ -1.77
USH2A-202ENST00000366942 BDH2Q9BUT1 245 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 TMEM168Q9H0V1 697 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 BPIFA1Q9NP55 256 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 PRKAB1Q9Y478 270 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 LOXL2Q9Y4K0 774 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 PCDHGB7Q9Y5F8 929 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 CEP290O15078 2479 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 SLC22A23A1A5C7 686 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 ILVBLA1L0T0 632 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms