RNA–Protein interactions for RNA: ENST00000361866.7

COL6A1-201, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL6A1, Length 4,238 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-201ENST00000361866 LRP8Q14114 963 aa13.66□□□□□ -0.22
COL6A1-201ENST00000361866 TIGD6Q17RP2 521 aa13.66□□□□□ -0.22
COL6A1-201ENST00000361866 TBC1D25Q3MII6 688 aa13.66□□□□□ -0.22
COL6A1-201ENST00000361866 USP39Q53GS9 565 aaKnown RBP13.66□□□□□ -0.22
COL6A1-201ENST00000361866 SMYD5Q6GMV2 418 aa13.66□□□□□ -0.22
COL6A1-201ENST00000361866 CES5AQ6NT32 575 aa13.66□□□□□ -0.22
COL6A1-201ENST00000361866 SH2D5Q6ZV89 423 aa13.66□□□□□ -0.22
COL6A1-201ENST00000361866 PRRT2Q7Z6L0 340 aaPredicted RBP13.66□□□□□ -0.22
COL6A1-201ENST00000361866 PTERQ96BW5 349 aa13.66□□□□□ -0.22
COL6A1-201ENST00000361866 LHPPQ9H008 270 aa13.66□□□□□ -0.22
COL6A1-201ENST00000361866 SLAMF8Q9P0V8 285 aa13.66□□□□□ -0.22
COL6A1-201ENST00000361866 CD84Q9UIB8 345 aa13.66□□□□□ -0.22
COL6A1-201ENST00000361866 KRT87PA6NCN2 255 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 SLC22A1O15245 554 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 CREG1O75629 220 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 SMIM18P0DKX4 95 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 RPL17P18621 184 aaKnown RBP13.65□□□□□ -0.22
COL6A1-201ENST00000361866 MAP2K5Q13163 448 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 NAE1Q13564 534 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 NIPAL1Q6NVV3 410 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 BLOC1S3Q6QNY0 202 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 CCDC149Q6ZUS6 474 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 CHERPQ8IWX8 916 aaKnown RBP13.65□□□□□ -0.22
COL6A1-201ENST00000361866 BIRC8Q96P09 236 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 RANBP9Q96S59 729 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 YTHDF1Q9BYJ9 559 aaKnown RBP13.65□□□□□ -0.22
COL6A1-201ENST00000361866 ZNF624Q9P2J8 865 aaPredicted RBP13.65□□□□□ -0.22
COL6A1-201ENST00000361866 USP22Q9UPT9 525 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 ZNF451Q9Y4E5 1061 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 ARIH1Q9Y4X5 557 aaPredicted RBP13.65□□□□□ -0.22
COL6A1-201ENST00000361866 A0A0D9SEW6 157 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 OR2AG2A6NM03 316 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 KPNA3O00505 521 aaPredicted RBP13.65□□□□□ -0.22
COL6A1-201ENST00000361866 AP2A2O94973 939 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 ESR1P03372 595 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 IL6P05231 212 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 APLP1P51693 650 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 BLVRAP53004 296 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 PTPN5P54829 565 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 TXNL4AP83876 142 aaKnown RBP13.65□□□□□ -0.22
COL6A1-201ENST00000361866 ZSWIM7Q19AV6 140 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 RETREG3Q86VR2 466 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 RBM12BQ8IXT5 1001 aaKnown RBP13.65□□□□□ -0.22
COL6A1-201ENST00000361866 LSMEM2Q8N112 164 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 IL4I1Q96RQ9 567 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 CNPPD1Q9BV87 410 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 TRIM45Q9H8W5 580 aaPredicted RBP13.65□□□□□ -0.22
COL6A1-201ENST00000361866 TBCCD1Q9NVR7 557 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 ZIM2Q9NZV7 527 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 MALT1Q9UDY8 824 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 ITGB4P16144 1822 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 COL18A1P39060 1754 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 GLYATL1P3A0A0U1RQE8 302 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 SMIM30A4D0T7 59 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 LOC730098B7Z3J9 87 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 PLOD3O60568 738 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 PSIP1O75475 530 aaKnown RBP13.65□□□□□ -0.22
COL6A1-201ENST00000361866 ENO2P09104 434 aaPredicted RBP13.65□□□□□ -0.22
COL6A1-201ENST00000361866 CD1EP15812 388 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 PORP16435 677 aaPredicted RBP13.65□□□□□ -0.22
COL6A1-201ENST00000361866 IL18R1Q13478 541 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 TCEA2Q15560 299 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 ATP6AP1Q15904 470 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 TMEM102Q8N9M5 508 aaPredicted RBP13.65□□□□□ -0.22
COL6A1-201ENST00000361866 KHSRPQ92945 711 aaKnown RBP eCLIP13.65□□□□□ -0.22
COL6A1-201ENST00000361866 MYRFLQ96LU7 910 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 SLC2A13Q96QE2 648 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 CCSER2Q9H7U1 834 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 AASDHPPTQ9NRN7 309 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 ERVK-18Q9QC07 812 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 GTF2IRD1Q9UHL9 959 aa13.65□□□□□ -0.22
COL6A1-201ENST00000361866 LCHNA4D1U4 455 aa13.64□□□□□ -0.23
COL6A1-201ENST00000361866 MYF6P23409 242 aa13.64□□□□□ -0.23
COL6A1-201ENST00000361866 GTF2E2P29084 291 aaKnown RBP13.64□□□□□ -0.23
COL6A1-201ENST00000361866 TAPT1Q6NXT6 567 aa13.64□□□□□ -0.23
COL6A1-201ENST00000361866 ZBTB2Q8N680 514 aa13.64□□□□□ -0.23
COL6A1-201ENST00000361866 KRTCAP2Q8N6L1 136 aa13.64□□□□□ -0.23
COL6A1-201ENST00000361866 MYO19Q96H55 970 aa13.64□□□□□ -0.23
COL6A1-201ENST00000361866 CTPS2Q9NRF8 586 aa13.64□□□□□ -0.23
COL6A1-201ENST00000361866 IGSF5Q9NSI5 407 aa13.64□□□□□ -0.23
COL6A1-201ENST00000361866 OLAHQ9NV23 265 aa13.64□□□□□ -0.23
COL6A1-201ENST00000361866 SNTNA6NMZ2 147 aa13.64□□□□□ -0.23
COL6A1-201ENST00000361866 OPRL1P41146 370 aa13.64□□□□□ -0.23
COL6A1-201ENST00000361866 MAGEA3P43357 314 aa13.64□□□□□ -0.23
COL6A1-201ENST00000361866 TUFMP49411 452 aaKnown RBP13.64□□□□□ -0.23
COL6A1-201ENST00000361866 HTR6P50406 440 aa13.64□□□□□ -0.23
COL6A1-201ENST00000361866 NCS1P62166 190 aa13.64□□□□□ -0.23
COL6A1-201ENST00000361866 ENPP6Q6UWR7 440 aa13.64□□□□□ -0.23
COL6A1-201ENST00000361866 RNF111Q6ZNA4 994 aa13.64□□□□□ -0.23
COL6A1-201ENST00000361866 MINDY1Q8N5J2 469 aa13.64□□□□□ -0.23
COL6A1-201ENST00000361866 OR4A15Q8NGL6 344 aa13.64□□□□□ -0.23
COL6A1-201ENST00000361866 TRIM63Q969Q1 353 aa13.64□□□□□ -0.23
COL6A1-201ENST00000361866 DIRAS2Q96HU8 199 aa13.64□□□□□ -0.23
COL6A1-201ENST00000361866 GFM1Q96RP9 751 aaKnown RBP13.64□□□□□ -0.23
COL6A1-201ENST00000361866 SEZ6LQ9BYH1 1024 aa13.64□□□□□ -0.23
COL6A1-201ENST00000361866 ADAMTS10Q9H324 1103 aa13.64□□□□□ -0.23
COL6A1-201ENST00000361866 GSTO2Q9H4Y5 243 aa13.64□□□□□ -0.23
COL6A1-201ENST00000361866 WDR6Q9NNW5 1121 aaKnown RBP13.64□□□□□ -0.23
COL6A1-201ENST00000361866 SNTG1Q9NSN8 517 aa13.64□□□□□ -0.23
COL6A1-201ENST00000361866 DKK3Q9UBP4 350 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms