RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 KCNN1Q92952 543 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 BTN2A3PQ96KV6 586 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 ADAD1Q96M93 576 aaKnown RBP7.23□□□□□ -1.25
VPS13A-202ENST00000357409 KCNC2Q96PR1 638 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 PIP5K1AQ99755 562 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 TBC1D10AQ9BXI6 508 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 TMEM185BQ9H7F4 350 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 STXBP5LQ9Y2K9 1186 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 TLL2Q9Y6L7 1015 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 A0A1B0GV50 99 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 TNFRSF11BO00300 401 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 PEX12O00623 359 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 OTCP00480 354 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 IFNA6P05013 189 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 KLK3P07288 261 aaPredicted RBP7.23□□□□□ -1.25
VPS13A-202ENST00000357409 HEXBP07686 556 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 PRSS56P0CW18 603 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 GRPRP30550 384 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 CBX5P45973 191 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 CDH12P55289 794 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 CARD16Q5EG05 197 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 PAPD7Q5XG87 772 aaKnown RBP7.23□□□□□ -1.25
VPS13A-202ENST00000357409 CUZD1Q86UP6 607 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 AMZ2Q86W34 360 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 OR10H4Q8NGA5 316 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 OR4K1Q8NGD4 311 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 ZNF516Q92618 1163 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 FAM129BQ96TA1 746 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 NDC1Q9BTX1 674 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 SPATA9Q9BWV2 254 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 METTL7AQ9H8H3 244 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 LRRC4CQ9HCJ2 640 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 FAM171A2A8MVW0 826 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 TM9SF1O15321 606 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 KCNJ13O60928 360 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 UGT2B17O75795 530 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 CYP11A1P05108 521 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 PAEPP09466 180 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 CCKBRP32239 447 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 CLCQ05315 142 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 HNF4GQ14541 408 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 PTPRRQ15256 657 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 OAFQ86UD1 273 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 OR2AJ1Q8NGZ0 328 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 SYN2Q92777 582 aaPredicted RBP7.23□□□□□ -1.25
VPS13A-202ENST00000357409 SLC38A2Q96QD8 506 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 VIPAS39Q9H9C1 493 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 ARL8BQ9NVJ2 186 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 RRN3Q9NYV6 651 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 A0A1W2PPL8 197 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 ZNF726A6NNF4 738 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 LRCH4O75427 683 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 MED26O95402 600 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 SLC34A1Q06495 639 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 PAQR3Q6TCH7 311 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 FAM47BQ8NA70 645 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 PIWIL2Q8TC59 973 aaKnown RBP7.23□□□□□ -1.25
VPS13A-202ENST00000357409 PIH1D2Q8WWB5 315 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 LRTOMTQ8WZ04 291 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 TBL1XR1Q9BZK7 514 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 DSN1Q9H410 356 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 SLC24A2Q9UI40 661 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 SOX1O00570 391 aaPredicted RBP7.23□□□□□ -1.25
VPS13A-202ENST00000357409 PGLSO95336 258 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 GNRH1P01148 92 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 GCNT1Q02742 428 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 ADHFE1Q8IWW8 467 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 RTL3Q8N8U3 475 aaKnown RBP7.23□□□□□ -1.25
VPS13A-202ENST00000357409 NAT9Q9BTE0 207 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 OR8D2Q9GZM6 311 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 ADAM30Q9UKF2 790 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 ZNF214Q9UL59 606 aaPredicted RBP7.23□□□□□ -1.25
VPS13A-202ENST00000357409 TMEM233B4DJY2 109 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 PRMT5O14744 637 aaPredicted RBP7.23□□□□□ -1.25
VPS13A-202ENST00000357409 CPNE3O75131 537 aaKnown RBP7.23□□□□□ -1.25
VPS13A-202ENST00000357409 BPNT1O95861 308 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 FHP07954 510 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 PEPDP12955 493 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 KELP23276 732 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 SOX9P48436 509 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 CPTPQ5TA50 214 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 OR5M10Q6IEU7 315 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 NXPE1Q8N323 547 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 PRELID2Q8N945 189 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 OR8S1Q8NH09 359 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 NUS1Q96E22 293 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 CITED4Q96RK1 184 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 GPR62Q9BZJ7 368 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 TDP1Q9NUW8 608 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 KCTD5Q9NXV2 234 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 C2CD2Q9Y426 696 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 LRRC7Q96NW7 1537 aa7.23□□□□□ -1.25
VPS13A-202ENST00000357409 RGSL1A5PLK6 1076 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 HACD1B0YJ81 288 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 CLDN9O95484 217 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 NUDT6P53370 316 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 SH3BGRP55822 239 aaPredicted RBP7.22□□□□□ -1.25
VPS13A-202ENST00000357409 SKP1P63208 163 aa7.22□□□□□ -1.25
VPS13A-202ENST00000357409 TARDBPQ13148 414 aaKnown RBP eCLIP7.22□□□□□ -1.25
VPS13A-202ENST00000357409 ARL13AQ5H913 290 aaPredicted RBP7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms