RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 TAS2R39P59534 338 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 ARHGAP8P85298 464 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 YWHAHQ04917 246 aaPredicted RBP2.28□□□□□ -2.04
VPS54-202ENST00000354504 MPP3Q13368 585 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 GRB7Q14451 532 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 PDK1Q15118 436 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 UGT8Q16880 541 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 GFOD2Q3B7J2 385 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 FUT11Q495W5 492 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 FASTKD1Q53R41 847 aaKnown RBP2.28□□□□□ -2.04
VPS54-202ENST00000354504 PPP6R3Q5H9R7 873 aaPredicted RBP2.28□□□□□ -2.04
VPS54-202ENST00000354504 SH2D4BQ5SQS7 431 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 ZFYVE27Q5T4F4 411 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 ANO7Q6IWH7 933 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 CD300LDQ6UXZ3 194 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 USP45Q70EL2 814 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 PPP1R3BQ86XI6 285 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 MIB1Q86YT6 1006 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 EPHX4Q8IUS5 362 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 LIX1LQ8IVB5 337 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 TRIM48Q8IWZ4 208 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 CPXM2Q8N436 756 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 KIF2BQ8N4N8 673 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 PCSK9Q8NBP7 692 aaKnown RBP2.28□□□□□ -2.04
VPS54-202ENST00000354504 PIK3C3Q8NEB9 887 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 URGCPQ8TCY9 931 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 ACTRT2Q8TDY3 377 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 MYLIPQ8WY64 445 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 NCSTNQ92542 709 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 GRAMD1AQ96CP6 724 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 STAMBPL1Q96FJ0 436 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 PDLIM5Q96HC4 596 aaKnown RBP2.28□□□□□ -2.04
VPS54-202ENST00000354504 VPS39Q96JC1 886 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 ZC3H10Q96K80 434 aaKnown RBP2.28□□□□□ -2.04
VPS54-202ENST00000354504 BTN2A3PQ96KV6 586 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 ZNF599Q96NL3 588 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 KLHL5Q96PQ7 755 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 SLC38A3Q99624 504 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 MMADHCQ9H3L0 296 aaPredicted RBP2.28□□□□□ -2.04
VPS54-202ENST00000354504 RHOJQ9H4E5 214 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 WDCPQ9H6R7 721 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 POPDC3Q9HBV1 291 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 TMEM181Q9P2C4 612 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 MTRF1LQ9UGC7 380 aaKnown RBP2.28□□□□□ -2.04
VPS54-202ENST00000354504 PTGDR2Q9Y5Y4 395 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 A0A1B0GTW7 788 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 NEMP2A6NFY4 417 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 ZNF839A8K0R7 811 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 GOLGA8TH3BQL2 631 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 K7ERQ8 282 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 CCL22O00626 93 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 B3GALT2O43825 422 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 OR1I1O60431 355 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 GCM2O75603 506 aaPredicted RBP2.28□□□□□ -2.04
VPS54-202ENST00000354504 B3GAT3O94766 335 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 F9P00740 461 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 TIMP1P01033 207 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 HRGP04196 525 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 ZNF26P17031 533 aaPredicted RBP2.28□□□□□ -2.04
VPS54-202ENST00000354504 ZNF37AP17032 561 aaPredicted RBP2.28□□□□□ -2.04
VPS54-202ENST00000354504 TACR2P21452 398 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 CRABP2P29373 138 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 GGT5P36269 586 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 OPRD1P41143 372 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 MSH2P43246 934 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 STC1P52823 247 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 ACTR3P61158 418 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 BASP1P80723 227 aaKnown RBP2.28□□□□□ -2.04
VPS54-202ENST00000354504 TBL3Q12788 808 aaKnown RBP2.28□□□□□ -2.04
VPS54-202ENST00000354504 NME3Q13232 169 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 CTBP1Q13363 440 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 CEACAM7Q14002 265 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 RFTN1Q14699 578 aaPredicted RBP2.28□□□□□ -2.04
VPS54-202ENST00000354504 CSRP2Q16527 193 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 PGS1Q32NB8 556 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 PCID2Q5JVF3 399 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 MFSD14CQ5VZR4 134 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 FAM109BQ6ICB4 259 aaPredicted RBP2.28□□□□□ -2.04
VPS54-202ENST00000354504 LRRC8EQ6NSJ5 796 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 PPP4R4Q6NUP7 873 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 Q6ZSR9 355 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 RFLNAQ6ZTI6 216 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 C11orf96Q7Z7L8 435 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 LCA5Q86VQ0 697 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 KCNMB4Q86W47 210 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 CCDC25Q86WR0 208 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 RIMKLAQ8IXN7 391 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 CCDC197Q8NCU1 140 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 OR13C4Q8NGS5 318 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 ZNF461Q8TAF7 563 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 UBTD2Q8WUN7 234 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 ZCCHC14Q8WYQ9 949 aaKnown RBP2.28□□□□□ -2.04
VPS54-202ENST00000354504 FGF11Q92914 225 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 NXNL1Q96CM4 212 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 TBC1D31Q96DN5 1066 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 FEM1CQ96JP0 617 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 NUDCD1Q96RS6 583 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 BTBD2Q9BX70 525 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 AP5M1Q9H0R1 490 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 SNX25Q9H3E2 840 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms