RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 VPS4BO75351 444 aa13.08□□□□□ -0.32
HMGB1-202ENST00000339872 PSIP1O75475 530 aaKnown RBP13.08□□□□□ -0.32
HMGB1-202ENST00000339872 WDR47O94967 919 aa13.08□□□□□ -0.32
HMGB1-202ENST00000339872 LBPP18428 481 aa13.08□□□□□ -0.32
HMGB1-202ENST00000339872 GGT5P36269 586 aa13.08□□□□□ -0.32
HMGB1-202ENST00000339872 PIK3CGP48736 1102 aa13.08□□□□□ -0.32
HMGB1-202ENST00000339872 HTR6P50406 440 aa13.08□□□□□ -0.32
HMGB1-202ENST00000339872 NUDT2P50583 147 aa13.08□□□□□ -0.32
HMGB1-202ENST00000339872 CDK3Q00526 305 aa13.08□□□□□ -0.32
HMGB1-202ENST00000339872 SMAD4Q13485 552 aaKnown RBP13.08□□□□□ -0.32
HMGB1-202ENST00000339872 KIF19Q2TAC6 998 aa13.08□□□□□ -0.32
HMGB1-202ENST00000339872 XKR7Q5GH72 579 aa13.08□□□□□ -0.32
HMGB1-202ENST00000339872 ZNF547Q8IVP9 402 aa13.08□□□□□ -0.32
HMGB1-202ENST00000339872 HMGCLL1Q8TB92 370 aa13.08□□□□□ -0.32
HMGB1-202ENST00000339872 KLK6Q92876 244 aa13.08□□□□□ -0.32
HMGB1-202ENST00000339872 PYCR2Q96C36 320 aa13.08□□□□□ -0.32
HMGB1-202ENST00000339872 COX14Q96I36 57 aa13.08□□□□□ -0.32
HMGB1-202ENST00000339872 CLPTM1LQ96KA5 538 aa13.08□□□□□ -0.32
HMGB1-202ENST00000339872 UBE2ZQ9H832 354 aaPredicted RBP13.08□□□□□ -0.32
HMGB1-202ENST00000339872 FBRSQ9HAH7 460 aa13.08□□□□□ -0.32
HMGB1-202ENST00000339872 ZFR2Q9UPR6 939 aaKnown RBP13.08□□□□□ -0.32
HMGB1-202ENST00000339872 ST14Q9Y5Y6 855 aa13.08□□□□□ -0.32
HMGB1-202ENST00000339872 LIN7AO14910 233 aaPredicted RBP13.07□□□□□ -0.32
HMGB1-202ENST00000339872 PEX11AO75192 247 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 CATP04040 527 aaKnown RBP13.07□□□□□ -0.32
HMGB1-202ENST00000339872 ITGAXP20702 1163 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 BDKRB1P46663 353 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 RIPK1Q13546 671 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 SKIV2LQ15477 1246 aaKnown RBP13.07□□□□□ -0.32
HMGB1-202ENST00000339872 ZXDCQ2QGD7 858 aaPredicted RBP13.07□□□□□ -0.32
HMGB1-202ENST00000339872 PTCHD3Q3KNS1 767 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 ZNF658BQ4V348 819 aaPredicted RBP13.07□□□□□ -0.32
HMGB1-202ENST00000339872 AGKQ53H12 422 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.07□□□□□ -0.32
HMGB1-202ENST00000339872 IL27RAQ6UWB1 636 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 LRRC70Q7Z2Q7 622 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 MYLK4Q86YV6 388 aaPredicted RBP13.07□□□□□ -0.32
HMGB1-202ENST00000339872 RASGRP3Q8IV61 690 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 OR2T11Q8NH01 316 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 RCN3Q96D15 328 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 FOPNLQ96NB1 174 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 HBEGFQ99075 208 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 OSBPL6Q9BZF3 934 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 MBNL1Q9NR56 388 aaKnown RBP13.07□□□□□ -0.32
HMGB1-202ENST00000339872 CCDC167Q9P0B6 97 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 PRKAB1Q9Y478 270 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 FFAR3O14843 346 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 GPR42O15529 346 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 PLRG1O43660 514 aaKnown RBP13.07□□□□□ -0.32
HMGB1-202ENST00000339872 NARSO43776 548 aaKnown RBP13.07□□□□□ -0.32
HMGB1-202ENST00000339872 POP7O75817 140 aaKnown RBP13.07□□□□□ -0.32
HMGB1-202ENST00000339872 PAK4O96013 591 aaPredicted RBP13.07□□□□□ -0.32
HMGB1-202ENST00000339872 SLC6A12P48065 614 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 ATP4BP51164 291 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 RPS21P63220 83 aaKnown RBP13.07□□□□□ -0.32
HMGB1-202ENST00000339872 PTK2BQ14289 1009 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 IRF4Q15306 451 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 ZRSR2Q15696 482 aaKnown RBP13.07□□□□□ -0.32
HMGB1-202ENST00000339872 SNCBQ16143 134 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 SCUBE1Q8IWY4 988 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 ULK2Q8IYT8 1036 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 DEFB107AQ8IZN7 70 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 NTMT1Q9BV86 223 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 LGR4Q9BXB1 951 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 ATG10Q9H0Y0 220 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 DENND2DQ9H6A0 471 aaPredicted RBP13.07□□□□□ -0.32
HMGB1-202ENST00000339872 RIC8BQ9NVN3 520 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 CIDEBQ9UHD4 219 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 GPR34Q9UPC5 381 aa13.07□□□□□ -0.32
HMGB1-202ENST00000339872 PCYT1BQ9Y5K3 369 aaPredicted RBP13.07□□□□□ -0.32
HMGB1-202ENST00000339872 LOC730098B7Z3J9 87 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 EBLN1P0CF75 366 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 ITPKAP23677 461 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 HNRNPH1P31943 449 aaKnown RBP13.06□□□□□ -0.32
HMGB1-202ENST00000339872 ADPRHP54922 357 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 NME5P56597 212 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 MRPS21P82921 87 aaKnown RBP13.06□□□□□ -0.32
HMGB1-202ENST00000339872 FGL2Q14314 439 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 INPP5AQ14642 412 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 AGERQ15109 404 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 MAPRE2Q15555 327 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 CCSMST1Q4G0I0 132 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 TTC23LQ6PF05 361 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 PLCD3Q8N3E9 789 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 OR9I1Q8NGQ6 314 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 RPLP0P6Q8NHW5 317 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 FBXL8Q96CD0 374 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 LINC00615Q96LM1 132 aaPredicted RBP13.06□□□□□ -0.32
HMGB1-202ENST00000339872 CCT7Q99832 543 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 RNF11Q9Y3C5 154 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 OR1A2Q9Y585 309 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 MYO10Q9HD67 2058 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 NUMA1Q14980 2115 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 A0A1W2PQU0 124 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 PRR35P0CG20 571 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 EPORP19235 508 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 MAPK9P45984 424 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 SGCGQ13326 291 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 NFE2L1Q14494 772 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 ABRAXAS2Q15018 415 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms