RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 PLLPQ9Y342 182 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 REREQ9P2R6 1566 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 LOC100509620A0A075B734 347 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 BBIP1A8MTZ0 92 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 ANGPTL1O95841 491 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 MLLT3P42568 568 aaPredicted RBP12.43□□□□□ -0.42
SDC3-201ENST00000336798 ARCN1P48444 511 aaKnown RBP12.43□□□□□ -0.42
SDC3-201ENST00000336798 PRR5P85299 388 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 C1orf94Q6P1W5 598 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 TAC4Q86UU9 113 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 AGAP2Q99490 1192 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 NMUR2Q9GZQ4 415 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 SP140LQ9H930 580 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 CDH22Q9UJ99 828 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 SNX7Q9UNH6 387 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 DLC1Q96QB1 1528 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 C5orf51A6NDU8 294 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 MATN2O00339 956 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 TOR1BO14657 336 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 MTX2O75431 263 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 WFS1O76024 890 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 PGRP06401 933 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 SLC7A1P30825 629 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 MTPNP58546 118 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 TARDBPQ13148 414 aaKnown RBP eCLIP12.43□□□□□ -0.42
SDC3-201ENST00000336798 LAPTM5Q13571 262 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 SLC1A5Q15758 541 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 ABCA11PQ4W5N1 156 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 BICRALQ6AI39 1079 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 SLC26A9Q7LBE3 791 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 PQLC1Q8N2U9 271 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 C11orf65Q8NCR3 313 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 OR5AK3PQ8NH89 298 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 WDR12Q9GZL7 423 aaKnown RBP12.43□□□□□ -0.42
SDC3-201ENST00000336798 PDZD7Q9H5P4 517 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 TCF7L1Q9HCS4 588 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 ARHGEF4Q9NR80 690 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 GIN1Q9NXP7 522 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 NUDT4Q9NZJ9 180 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 PRPF19Q9UMS4 504 aaKnown RBP12.43□□□□□ -0.42
SDC3-201ENST00000336798 CYP3A7-CYP3A51PA0A087WV96 503 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 ALOX15BO15296 676 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 GJA1P17302 382 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 CYP3A7P24462 503 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 LMO2P25791 158 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 CRHR1P34998 444 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 OR2L8Q8NGY9 312 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 ZNF285Q96NJ3 590 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 S100A14Q9HCY8 104 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 POLMQ9NP87 494 aaPredicted RBP12.43□□□□□ -0.42
SDC3-201ENST00000336798 SNTG1Q9NSN8 517 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 SLC38A8A6NNN8 435 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 TBX1O43435 398 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 GATBO75879 557 aaKnown RBP12.42□□□□□ -0.42
SDC3-201ENST00000336798 FESP07332 822 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 ACP5P13686 325 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 ZNF20P17024 532 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 PSMA1P25786 263 aaKnown RBP12.42□□□□□ -0.42
SDC3-201ENST00000336798 CDH4P55283 916 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 PCBP1Q15365 356 aaKnown RBP eCLIP12.42□□□□□ -0.422e-10■■■□□ 18.2
SDC3-201ENST00000336798 GPR68Q15743 365 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 RFTN2Q52LD8 501 aaPredicted RBP12.42□□□□□ -0.42
SDC3-201ENST00000336798 KIAA1161Q6NSJ0 714 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 TRABD2AQ86V40 505 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 ZNF567Q8N184 647 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 ALG3Q92685 438 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 MKL1Q969V6 931 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 BAIAP2Q9UQB8 552 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 NOX1Q9Y5S8 564 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 CLUHO75153 1309 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 A0A1W2PRU2 124 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 MAGEB17A8MXT2 336 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 TRAFD1O14545 582 aaPredicted RBP12.42□□□□□ -0.42
SDC3-201ENST00000336798 TGFB1I1O43294 461 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 TSPAN1O60635 241 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 CPNE3O75131 537 aaKnown RBP12.42□□□□□ -0.42
SDC3-201ENST00000336798 CLPXO76031 633 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 RPP14O95059 124 aaKnown RBP12.42□□□□□ -0.42
SDC3-201ENST00000336798 APOC1P02654 83 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 ARSIQ5FYB1 569 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 ANKRD22Q5VYY1 191 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 CHRDL2Q6WN34 429 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 SLC22A8Q8TCC7 542 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 TIMM8BQ9Y5J9 83 aaPredicted RBP12.42□□□□□ -0.42
SDC3-201ENST00000336798 UBXN7O94888 489 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 GADD45GO95257 159 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 POP4O95707 220 aaKnown RBP12.42□□□□□ -0.42
SDC3-201ENST00000336798 CSKP41240 450 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 SLC9B1Q4ZJI4 515 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 CRTC2Q53ET0 693 aaPredicted RBP12.42□□□□□ -0.42
SDC3-201ENST00000336798 ARL13AQ5H913 290 aaPredicted RBP12.42□□□□□ -0.42
SDC3-201ENST00000336798 LCN1P1Q5VSP4 162 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 STRADAQ7RTN6 431 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 SUN3Q8TAQ9 357 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 C8orf48Q96LL4 319 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 MGME1Q9BQP7 344 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 SEC61A2Q9H9S3 476 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 CLDND1Q9NY35 253 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 TM7SF2O76062 418 aa12.42□□□□□ -0.42
SDC3-201ENST00000336798 C8AP07357 584 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms