RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 MPP5Q8N3R9 675 aa13.26□□□□□ -0.29
RFFL-201ENST00000315249 EIF1ADQ8N9N8 165 aaKnown RBP13.26□□□□□ -0.29
RFFL-201ENST00000315249 OR10T2Q8NGX3 314 aa13.26□□□□□ -0.29
RFFL-201ENST00000315249 TMEM125Q96AQ2 219 aa13.26□□□□□ -0.29
RFFL-201ENST00000315249 CD248Q9HCU0 757 aa13.26□□□□□ -0.29
RFFL-201ENST00000315249 MGRN1O60291 552 aa13.26□□□□□ -0.29
RFFL-201ENST00000315249 DUSP3P51452 185 aaPredicted RBP13.26□□□□□ -0.29
RFFL-201ENST00000315249 COL9A2Q14055 689 aaPredicted RBP13.26□□□□□ -0.29
RFFL-201ENST00000315249 CLDN19Q8N6F1 224 aa13.26□□□□□ -0.29
RFFL-201ENST00000315249 TBL1XR1Q9BZK7 514 aa13.26□□□□□ -0.29
RFFL-201ENST00000315249 LMAN1LQ9HAT1 526 aa13.26□□□□□ -0.29
RFFL-201ENST00000315249 SAR1AQ9NR31 198 aa13.26□□□□□ -0.29
RFFL-201ENST00000315249 CTSAP10619 480 aa13.26□□□□□ -0.29
RFFL-201ENST00000315249 SERPINB1P30740 379 aa13.26□□□□□ -0.29
RFFL-201ENST00000315249 PTP4A2Q12974 167 aa13.26□□□□□ -0.29
RFFL-201ENST00000315249 HKDC1Q2TB90 917 aa13.26□□□□□ -0.29
RFFL-201ENST00000315249 ARMCX4Q5H9R4 360 aa13.26□□□□□ -0.29
RFFL-201ENST00000315249 GALNT7Q86SF2 657 aa13.26□□□□□ -0.29
RFFL-201ENST00000315249 FAM13CQ8NE31 585 aa13.26□□□□□ -0.29
RFFL-201ENST00000315249 TTLQ8NG68 377 aa13.26□□□□□ -0.29
RFFL-201ENST00000315249 SDC3O75056 442 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 REM1O75628 298 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 WFS1O76024 890 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 CLPTM1O96005 669 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 CYP11A1P05108 521 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 PCBP2Q15366 365 aaKnown RBP eCLIP13.25□□□□□ -0.292e-11■□□□□ 9.2
RFFL-201ENST00000315249 IL21RQ9HBE5 538 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 TRPS1Q9UHF7 1281 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 GPR34Q9UPC5 381 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 MAGEA13PA6NCF6 341 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 RNGTTO60942 597 aaKnown RBP13.25□□□□□ -0.29
RFFL-201ENST00000315249 EDNRBP24530 442 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 SLC7A2P52569 658 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 ARL13AQ5H913 290 aaPredicted RBP13.25□□□□□ -0.29
RFFL-201ENST00000315249 TXNRD3NBQ6F5E7 133 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 ZC3H14Q6PJT7 736 aaKnown RBP13.25□□□□□ -0.29
RFFL-201ENST00000315249 HCFC1R1Q9NWW0 138 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 SALL4Q9UJQ4 1053 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 SLC22A14Q9Y267 594 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 K7EPI3 171 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 HAS3O00219 553 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 BEST1O76090 585 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 JUPP14923 745 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 LCP2Q13094 533 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 NDUFAF6Q330K2 333 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 NIPA2Q8N8Q9 360 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 TSACCQ96A04 125 aaPredicted RBP13.25□□□□□ -0.29
RFFL-201ENST00000315249 FEM1AQ9BSK4 669 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 HRASLS2Q9NWW9 162 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 PPM1HQ9ULR3 514 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 PNLIPRP1P54315 467 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 TAS2R39P59534 338 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 NFKB2Q00653 900 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 ZNF57Q68EA5 555 aaPredicted RBP13.25□□□□□ -0.29
RFFL-201ENST00000315249 SUSD1Q6UWL2 747 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 JPH3Q8WXH2 748 aaPredicted RBP13.25□□□□□ -0.29
RFFL-201ENST00000315249 ZIC5Q96T25 663 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 PTGFRNQ9P2B2 879 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 SLC17A6Q9P2U8 582 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 IGLON5A6NGN9 336 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 CAPN14A8MX76 684 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 MAGEB3O15480 346 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 NEK5Q6P3R8 708 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 RINLQ6ZS11 566 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 TP53INP1Q96A56 240 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 ZBED6CLQ96FA7 236 aaPredicted RBP13.25□□□□□ -0.29
RFFL-201ENST00000315249 Q96MT0 163 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 SPATA9Q9BWV2 254 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 IKZF2Q9UKS7 526 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 PHF24Q9UPV7 400 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 NRP2O60462 931 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 KERAO60938 352 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 ZNF623O75123 536 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 STX11O75558 287 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 TNFRSF8P28908 595 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 NTSR1P30989 418 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 TRABD2AQ86V40 505 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 ULK2Q8IYT8 1036 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 C8orf59Q8N0T1 100 aaPredicted RBP13.25□□□□□ -0.29
RFFL-201ENST00000315249 CPSF7Q8N684 471 aaKnown RBP13.25□□□□□ -0.29
RFFL-201ENST00000315249 MMADHCQ9H3L0 296 aaPredicted RBP13.25□□□□□ -0.29
RFFL-201ENST00000315249 TMEM248Q9NWD8 314 aa13.25□□□□□ -0.29
RFFL-201ENST00000315249 A0A1W2PQU0 124 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 FAM58BPP0C7Q3 252 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 OLIG2Q13516 323 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 HLA-CQ95604 372 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 RGMAQ96B86 450 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 TRNT1Q96Q11 434 aaKnown RBP13.24□□□□□ -0.29
RFFL-201ENST00000315249 GSTK1Q9Y2Q3 226 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 FOXO6A8MYZ6 492 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 PREPP48147 710 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 DYNC1I2Q13409 638 aaKnown RBP13.24□□□□□ -0.29
RFFL-201ENST00000315249 CLLU1OSQ5K130 101 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 ARMC4Q5T2S8 1044 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 TRMT10BQ6PF06 316 aaKnown RBP13.24□□□□□ -0.29
RFFL-201ENST00000315249 OR2T12Q8NG77 320 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 ARMC5Q96C12 935 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 ZHX1-C8orf76Q96EF9 292 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 TGM7Q96PF1 710 aa13.24□□□□□ -0.29
RFFL-201ENST00000315249 GPER1Q99527 375 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms