RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 CHRNA10Q9GZZ6 450 aa14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 AGPAT4Q9NRZ5 378 aa14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 NDOR1Q9UHB4 597 aa14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 SRPK3Q9UPE1 567 aa14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 COPG1Q9Y678 874 aaKnown RBP14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 CCDC88CQ9P219 2028 aa14.31□□□□□ -0.12
CCDC88B-201ENST00000301897 FER1L5A0AVI2 2057 aa14.3□□□□□ -0.12
CCDC88B-201ENST00000301897 MDC1Q14676 2089 aaKnown RBP14.3□□□□□ -0.12
CCDC88B-201ENST00000301897 SVILO95425 2214 aa14.3□□□□□ -0.12
CCDC88B-201ENST00000301897 LDB2O43679 373 aa14.3□□□□□ -0.12
CCDC88B-201ENST00000301897 SGTAO43765 313 aa14.3□□□□□ -0.12
CCDC88B-201ENST00000301897 TNNT1P13805 278 aa14.3□□□□□ -0.12
CCDC88B-201ENST00000301897 PECAM1P16284 738 aaPredicted RBP14.3□□□□□ -0.12
CCDC88B-201ENST00000301897 PER3P56645 1201 aa14.3□□□□□ -0.12
CCDC88B-201ENST00000301897 SOX8P57073 446 aa14.3□□□□□ -0.12
CCDC88B-201ENST00000301897 DCDP81605 110 aaKnown RBP14.3□□□□□ -0.12
CCDC88B-201ENST00000301897 MLIPQ5VWP3 458 aa14.3□□□□□ -0.12
CCDC88B-201ENST00000301897 KAZNQ674X7 775 aa14.3□□□□□ -0.12
CCDC88B-201ENST00000301897 RHBDD2Q6NTF9 364 aa14.3□□□□□ -0.12
CCDC88B-201ENST00000301897 SPESP1Q6UW49 350 aa14.3□□□□□ -0.12
CCDC88B-201ENST00000301897 CDHR3Q6ZTQ4 885 aa14.3□□□□□ -0.12
CCDC88B-201ENST00000301897 ZC3H18Q86VM9 953 aaKnown RBP14.3□□□□□ -0.12
CCDC88B-201ENST00000301897 NXPE1Q8N323 547 aa14.3□□□□□ -0.12
CCDC88B-201ENST00000301897 OR2Y1Q8NGV0 311 aa14.3□□□□□ -0.12
CCDC88B-201ENST00000301897 PPP1R2P1Q96PQ5 205 aa14.3□□□□□ -0.12
CCDC88B-201ENST00000301897 BARD1Q99728 777 aaKnown RBP14.3□□□□□ -0.12
CCDC88B-201ENST00000301897 GBA3Q9H227 469 aa14.3□□□□□ -0.12
CCDC88B-201ENST00000301897 OR52A5Q9H2C5 316 aa14.3□□□□□ -0.12
CCDC88B-201ENST00000301897 COG4Q9H9E3 785 aa14.3□□□□□ -0.12
CCDC88B-201ENST00000301897 FKBPLQ9UIM3 349 aa14.3□□□□□ -0.12
CCDC88B-201ENST00000301897 PTRH2Q9Y3E5 179 aaKnown RBP14.3□□□□□ -0.12
CCDC88B-201ENST00000301897 PCM1Q15154 2024 aa14.3□□□□□ -0.12
CCDC88B-201ENST00000301897 F5H423 210 aaPredicted RBP14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 BTN3A3O00478 584 aa14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 DDX3YO15523 660 aaKnown RBP14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 OR2B3O76000 313 aa14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 AGTP01019 485 aa14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 TPM1P09493 284 aa14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 COL8A1P27658 744 aa14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 XIAPP98170 497 aa14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 PTPRCAPQ14761 206 aa14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 TCEAL1Q15170 157 aa14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 CYP2A13Q16696 494 aa14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 GPR33Q49SQ1 333 aa14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 RANBP10Q6VN20 620 aa14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 SPOCD1Q6ZMY3 1216 aa14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 SNX20Q7Z614 316 aa14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 ADGRF3Q8IZF5 1079 aa14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 LILRA3Q8N6C8 439 aaPredicted RBP14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 C19orf47Q8N9M1 422 aaKnown RBP14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 ST6GALNAC3Q8NDV1 305 aa14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 OR52E1Q8NGJ3 308 aa14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 UBE2Q2Q8WVN8 375 aa14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 PTERQ96BW5 349 aa14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 LRRC45Q96CN5 670 aa14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 CCDC42Q96M95 316 aa14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 FICDQ9BVA6 458 aa14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 ZNF552Q9H707 407 aaPredicted RBP14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 ATP13A2Q9NQ11 1180 aa14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 TXLNGQ9NUQ3 528 aa14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 P4HTMQ9NXG6 502 aa14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 ACTR10Q9NZ32 417 aa14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 IFNKQ9P0W0 207 aa14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 IFT80Q9P2H3 777 aaPredicted RBP14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 INTUQ9ULD6 942 aa14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 AAR2Q9Y312 384 aaKnown RBP14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 PCDHGA10Q9Y5H3 936 aa14.29□□□□□ -0.12
CCDC88B-201ENST00000301897 ANKRD17O75179 2603 aaKnown RBP14.28□□□□□ -0.12
CCDC88B-201ENST00000301897 ZSCAN9O15535 394 aaPredicted RBP14.28□□□□□ -0.12
CCDC88B-201ENST00000301897 KDM1AO60341 852 aa14.28□□□□□ -0.12
CCDC88B-201ENST00000301897 ZRANB2O95218 330 aaKnown RBP eCLIP14.28□□□□□ -0.12
CCDC88B-201ENST00000301897 COMTP21964 271 aa14.28□□□□□ -0.12
CCDC88B-201ENST00000301897 SHMT2P34897 504 aa14.28□□□□□ -0.12
CCDC88B-201ENST00000301897 AIMP2Q13155 320 aaKnown RBP14.28□□□□□ -0.12
CCDC88B-201ENST00000301897 BOP1Q14137 746 aaKnown RBP14.28□□□□□ -0.12
CCDC88B-201ENST00000301897 PRPSAP1Q14558 356 aa14.28□□□□□ -0.12
CCDC88B-201ENST00000301897 CRB2Q5IJ48 1285 aa14.28□□□□□ -0.12
CCDC88B-201ENST00000301897 TLDC1Q6P9B6 456 aa14.28□□□□□ -0.12
CCDC88B-201ENST00000301897 Q6ZS92 163 aa14.28□□□□□ -0.12
CCDC88B-201ENST00000301897 RCOR2Q8IZ40 523 aa14.28□□□□□ -0.12
CCDC88B-201ENST00000301897 DENND1AQ8TEH3 1009 aa14.28□□□□□ -0.12
CCDC88B-201ENST00000301897 TFGQ92734 400 aaPredicted RBP14.28□□□□□ -0.12
CCDC88B-201ENST00000301897 GBP5Q96PP8 586 aa14.28□□□□□ -0.12
CCDC88B-201ENST00000301897 ZDHHC3Q9NYG2 299 aa14.28□□□□□ -0.12
CCDC88B-201ENST00000301897 POLG2Q9UHN1 485 aa14.28□□□□□ -0.12
CCDC88B-201ENST00000301897 FEZ2Q9UHY8 353 aaPredicted RBP14.28□□□□□ -0.12
CCDC88B-201ENST00000301897 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.28□□□□□ -0.12
CCDC88B-201ENST00000301897 APCP25054 2843 aa14.28□□□□□ -0.12
CCDC88B-201ENST00000301897 ZGRF1Q86YA3 2104 aa14.27□□□□□ -0.12
CCDC88B-201ENST00000301897 POLQO75417 2590 aa14.27□□□□□ -0.13
CCDC88B-201ENST00000301897 IGLV3-16A0A075B6K0 115 aa14.27□□□□□ -0.13
CCDC88B-201ENST00000301897 hCG_1818297A0A087WSY0 165 aa14.27□□□□□ -0.13
CCDC88B-201ENST00000301897 QSOX1O00391 747 aa14.27□□□□□ -0.13
CCDC88B-201ENST00000301897 STK10O94804 968 aaKnown RBP14.27□□□□□ -0.13
CCDC88B-201ENST00000301897 CBSLP0DN79 551 aa14.27□□□□□ -0.13
CCDC88B-201ENST00000301897 PVRP15151 417 aa14.27□□□□□ -0.13
CCDC88B-201ENST00000301897 TNFRSF8P28908 595 aa14.27□□□□□ -0.13
CCDC88B-201ENST00000301897 ADRA1AP35348 466 aa14.27□□□□□ -0.13
CCDC88B-201ENST00000301897 CBSP35520 551 aa14.27□□□□□ -0.13
CCDC88B-201ENST00000301897 GLRBP48167 497 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms