RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 NUDT6P53370 316 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 NAPRTQ6XQN6 538 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 LRRC49Q8IUZ0 686 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 STYXQ8WUJ0 223 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 PTCD2Q8WV60 388 aaKnown RBP15.11■□□□□ 0.01
SHH-201ENST00000297261 NPY6RQ99463 290 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 MRPL17Q9NRX2 175 aaKnown RBP15.11■□□□□ 0.01
SHH-201ENST00000297261 MOCS1Q9NZB8 636 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 E9PAM4 449 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 PLK4O00444 970 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 CYP11A1P05108 521 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 ATF4P18848 351 aaPredicted RBP15.11■□□□□ 0.01
SHH-201ENST00000297261 SLC15A1P46059 708 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 ZZZ3Q8IYH5 903 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 CFAP52Q8N1V2 620 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 TRUB1Q8WWH5 349 aaKnown RBP15.11■□□□□ 0.01
SHH-201ENST00000297261 TMCO6Q96DC7 493 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 FEM1CQ96JP0 617 aa15.11■□□□□ 0.01
SHH-201ENST00000297261 EFCAB14O75071 495 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 FABP3P05413 133 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 HPCAL1P37235 193 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 ALDH3A2P51648 485 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 DIO3P55073 304 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 RAB25P57735 213 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 KIAA0930Q6ICG6 404 aaPredicted RBP15.1■□□□□ 0.01
SHH-201ENST00000297261 CDC73Q6P1J9 531 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 GALNT12Q8IXK2 581 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 IZUMO1Q8IYV9 350 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 OR5K1Q8NHB7 308 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 KCNA7Q96RP8 456 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 CGREF1Q99674 301 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 PCDHB9Q9Y5E1 797 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 FER1L6Q2WGJ9 1857 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 LOC100130705A0A1B0GUX0 176 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 DIRAS1O95057 198 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 CTPS1P17812 591 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 TMBIM6P55061 237 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 UFM1P61960 85 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 HERVK_113P63132 956 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 ZBTB6Q15916 424 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 PLEKHG6Q3KR16 790 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 ARMC12Q5T9G4 340 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 PIM3Q86V86 326 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 ZNF296Q8WUU4 475 aaPredicted RBP15.1■□□□□ 0.01
SHH-201ENST00000297261 TMEM159Q96B96 161 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 ERVK-6Q9BXR3 956 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 CCDC59Q9P031 241 aaKnown RBP15.1■□□□□ 0.01
SHH-201ENST00000297261 OR6C70A6NIJ9 312 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 PALM2-AKAP2B1ALY0 433 aaPredicted RBP15.1■□□□□ 0.01
SHH-201ENST00000297261 TNFRSF11BO00300 401 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 KPNA5O15131 536 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 PRKAG1P54619 331 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 TLE2Q04725 743 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 LGALS3BPQ08380 585 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 KCNAB2Q13303 367 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 IL18Q14116 193 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 ZNF404Q494X3 552 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 C5orf22Q49AR2 442 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 CPNE9Q8IYJ1 553 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 CCM2LQ9NUG4 571 aaPredicted RBP15.1■□□□□ 0.01
SHH-201ENST00000297261 GALPQ9UBC7 116 aa15.1■□□□□ 0.01
SHH-201ENST00000297261 IRAK2O43187 625 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 RPP40O75818 363 aaKnown RBP15.09■□□□□ 0.01
SHH-201ENST00000297261 C9P02748 559 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 EPORP19235 508 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 CCNCP24863 283 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 TIE1P35590 1138 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 GATMP50440 423 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 ATAD3BQ5T9A4 648 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 MZT2AQ6P582 158 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 NTAN1Q96AB6 310 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 FCRL3Q96P31 734 aaPredicted RBP15.09■□□□□ 0.01
SHH-201ENST00000297261 CMTM6Q9NX76 183 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 MKS1Q9NXB0 559 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 ANKDD1BA6NHY2 528 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 INMTO95050 263 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 TBX18O95935 607 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 GOT2P00505 430 aaKnown RBP15.09■□□□□ 0.01
SHH-201ENST00000297261 PFKMP08237 780 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 SPATA31D3P0C874 917 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 GSTT2P0CG29 244 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 GSTT2BP0CG30 244 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 ITGA2P17301 1181 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 SLC6A2P23975 617 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 TRIM71Q2Q1W2 868 aaKnown RBP15.09■□□□□ 0.01
SHH-201ENST00000297261 RNASE12Q5GAN4 147 aaKnown RBP15.09■□□□□ 0.01
SHH-201ENST00000297261 SDE2Q6IQ49 451 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 SYCE2Q6PIF2 218 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 SPATA31D4Q6ZUB0 917 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 GPRIN1Q7Z2K8 1008 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 LRRC20Q8TCA0 184 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 GTPBP3Q969Y2 492 aaKnown RBP15.09■□□□□ 0.01
SHH-201ENST00000297261 C20orf27Q9GZN8 174 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 TUBA3CQ13748 450 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 TRIM48Q8IWZ4 208 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 FUBP3Q96I24 572 aaKnown RBP eCLIP15.09■□□□□ 0.01
SHH-201ENST00000297261 BTN2A3PQ96KV6 586 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 CLEC4AQ9UMR7 237 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 RWDD3Q9Y3V2 267 aa15.09■□□□□ 0.01
SHH-201ENST00000297261 CEPT1Q9Y6K0 416 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms