RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 ADM5C9JUS6 153 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 IRF6O14896 467 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 DHX15O43143 795 aaKnown RBP9.72□□□□□ -0.85
COL6A3-201ENST00000295550 IFNW1P05000 195 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 AFF1P51825 1210 aaKnown RBP9.72□□□□□ -0.85
COL6A3-201ENST00000295550 THOP1P52888 689 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 CTBP1Q13363 440 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 ZNF267Q14586 743 aaPredicted RBP9.72□□□□□ -0.85
COL6A3-201ENST00000295550 IRGQQ8WZA9 623 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 ITFG2Q969R8 447 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 LGR4Q9BXB1 951 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 GBA2Q9HCG7 927 aaPredicted RBP9.72□□□□□ -0.85
COL6A3-201ENST00000295550 FBXO5Q9UKT4 447 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 CPSF4LA6NMK7 179 aaKnown RBP9.72□□□□□ -0.85
COL6A3-201ENST00000295550 TNFRSF11BO00300 401 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 H6PDO95479 791 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 COL6A1P12109 1028 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 PGDP52209 483 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 GXYLT1Q4G148 440 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 SH3D19Q5HYK7 790 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 RAET1GQ6H3X3 334 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 ZCCHC12Q6PEW1 402 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 TMEM192Q8IY95 271 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 UBR7Q8N806 425 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 CCDC54Q8NEL0 328 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 C7orf43Q8WVR3 580 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 SLC39A1Q9NY26 324 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 CFL2Q9Y281 166 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 CCNB2O95067 398 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 ABL2P42684 1182 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 CPSF6Q16630 551 aaKnown RBP eCLIP9.72□□□□□ -0.85
COL6A3-201ENST00000295550 CCDC28AQ8IWP9 274 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 UNC5BQ8IZJ1 945 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 C2orf49Q9BVC5 232 aaPredicted RBP9.72□□□□□ -0.85
COL6A3-201ENST00000295550 KAT8Q9H7Z6 458 aaKnown RBP9.72□□□□□ -0.85
COL6A3-201ENST00000295550 GLOD4Q9HC38 313 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 TMLHEQ9NVH6 421 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 MAPK8P45983 427 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 CRYBB1P53674 252 aaPredicted RBP9.71□□□□□ -0.85
COL6A3-201ENST00000295550 POM121L1PQ3SYA9 428 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 TAPT1Q6NXT6 567 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 C12orf65Q9H3J6 166 aaKnown RBP9.71□□□□□ -0.85
COL6A3-201ENST00000295550 TRPV4Q9HBA0 871 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 LOC100509620A0A075B734 347 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 EXOC2Q96KP1 924 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 ASB8Q9H765 288 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 WASF2Q9Y6W5 498 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 PEPDP12955 493 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 SCNN1GP51170 649 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 ABRQ12979 859 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 PTPRNQ16849 979 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 USP41Q3LFD5 358 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 SLC30A6Q6NXT4 461 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 CPNE8Q86YQ8 564 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 OR2L2Q8NH16 312 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 DNASE1L2Q92874 299 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 LPIN3Q9BQK8 851 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 PAGE1O75459 146 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 ACSL1P33121 698 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 CDH5P33151 784 aaPredicted RBP9.71□□□□□ -0.85
COL6A3-201ENST00000295550 PPM1AP35813 382 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 ASMTP46597 345 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 CERCAMQ5T4B2 595 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 FAM151BQ6UXP7 276 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 MPP5Q8N3R9 675 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 ENDOVQ8N8Q3 282 aaKnown RBP9.71□□□□□ -0.85
COL6A3-201ENST00000295550 ZNF516Q92618 1163 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 KXD1Q9BQD3 176 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 AHDC1Q5TGY3 1603 aaPredicted RBP9.71□□□□□ -0.85
COL6A3-201ENST00000295550 MMP3P08254 477 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 PGAM2P15259 253 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 RPS2P15880 293 aaKnown RBP9.71□□□□□ -0.85
COL6A3-201ENST00000295550 ADRA1BP35368 520 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 KIR3DL1P43629 444 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 PDX1P52945 283 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 ZNF627Q7L945 461 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 RANBP3LQ86VV4 465 aaPredicted RBP9.71□□□□□ -0.85
COL6A3-201ENST00000295550 SGK2Q9HBY8 427 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 BPIFA1Q9NP55 256 aa9.71□□□□□ -0.85
COL6A3-201ENST00000295550 DNAAF2Q9NVR5 837 aaKnown RBP9.71□□□□□ -0.85
COL6A3-201ENST00000295550 SIM2Q14190 667 aaPredicted RBP9.71□□□□□ -0.86
COL6A3-201ENST00000295550 CDCA2Q69YH5 1023 aaPredicted RBP9.71□□□□□ -0.86
COL6A3-201ENST00000295550 SLC25A25Q6KCM7 469 aa9.71□□□□□ -0.86
COL6A3-201ENST00000295550 GPR88Q9GZN0 384 aa9.71□□□□□ -0.86
COL6A3-201ENST00000295550 RC3H2Q9HBD1 1191 aaKnown RBP9.71□□□□□ -0.86
COL6A3-201ENST00000295550 MTMR10Q9NXD2 777 aa9.71□□□□□ -0.86
COL6A3-201ENST00000295550 TRPS1Q9UHF7 1281 aa9.71□□□□□ -0.86
COL6A3-201ENST00000295550 FZD1Q9UP38 647 aa9.71□□□□□ -0.86
COL6A3-201ENST00000295550 FAM149AA5PLN7 773 aa9.71□□□□□ -0.86
COL6A3-201ENST00000295550 SLC15A5A6NIM6 579 aa9.71□□□□□ -0.86
COL6A3-201ENST00000295550 NPHS1O60500 1241 aa9.71□□□□□ -0.86
COL6A3-201ENST00000295550 RP2O75695 350 aa9.71□□□□□ -0.86
COL6A3-201ENST00000295550 CLPXO76031 633 aa9.71□□□□□ -0.86
COL6A3-201ENST00000295550 VPS26BQ4G0F5 336 aa9.71□□□□□ -0.86
COL6A3-201ENST00000295550 EIF5AL1Q6IS14 154 aaKnown RBP9.71□□□□□ -0.86
COL6A3-201ENST00000295550 B3GNT5Q9BYG0 378 aa9.71□□□□□ -0.86
COL6A3-201ENST00000295550 CNTNAP1P78357 1384 aa9.71□□□□□ -0.86
COL6A3-201ENST00000295550 MSR1P21757 451 aa9.71□□□□□ -0.86
COL6A3-201ENST00000295550 ARCN1P48444 511 aaKnown RBP9.71□□□□□ -0.86
COL6A3-201ENST00000295550 RPA4Q13156 261 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms