RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 RNF169Q8NCN4 708 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 CCNYQ8ND76 341 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 FAM46DQ8NEK8 389 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 HUS1BQ8NHY5 278 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 MBD3L2Q8NHZ7 208 aaPredicted RBP4.52□□□□□ -1.69
CD44-202ENST00000278385 BPIFB1Q8TDL5 484 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 ELP5Q8TE02 316 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 CACTINQ8WUQ7 758 aaKnown RBP4.52□□□□□ -1.69
CD44-202ENST00000278385 SLC9A6Q92581 669 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 EXT2Q93063 718 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 FBXO32Q969P5 355 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 NCLNQ969V3 563 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 MMABQ96EY8 250 aaPredicted RBP4.52□□□□□ -1.69
CD44-202ENST00000278385 ZNF503Q96F45 646 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 NSMCE2Q96MF7 247 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 ZNF560Q96MR9 790 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 TTC25Q96NG3 672 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 ZNF558Q96NG5 402 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 NECTIN4Q96NY8 510 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 PSKH2Q96QS6 385 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 SECISBP2Q96T21 854 aaKnown RBP4.52□□□□□ -1.69
CD44-202ENST00000278385 NAP1L3Q99457 506 aaPredicted RBP4.52□□□□□ -1.69
CD44-202ENST00000278385 TMEM117Q9H0C3 514 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 RAB17Q9H0T7 212 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 PLK3Q9H4B4 646 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 EPHX3Q9H6B9 360 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 AKIRIN1Q9H9L7 192 aaPredicted RBP4.52□□□□□ -1.69
CD44-202ENST00000278385 USP29Q9HBJ7 922 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 PRMT7Q9NVM4 692 aaPredicted RBP4.52□□□□□ -1.69
CD44-202ENST00000278385 IL1RAPL1Q9NZN1 696 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 NCKIPSDQ9NZQ3 722 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 DBNLQ9UJU6 430 aaKnown RBP4.52□□□□□ -1.69
CD44-202ENST00000278385 PLAGL1Q9UM63 463 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 EXOC6BQ9Y2D4 811 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 STK38LQ9Y2H1 464 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 PCDHB7Q9Y5E2 793 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 NOX1Q9Y5S8 564 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 ZHX2Q9Y6X8 837 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 ATRNL1Q5VV63 1379 aa4.52□□□□□ -1.69
CD44-202ENST00000278385 UBE4BO95155 1302 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 A0A0A6YYC8 382 aaPredicted RBP4.51□□□□□ -1.69
CD44-202ENST00000278385 OR6C74A6NCV1 312 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 TMEM191CA6NGB0 347 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 ARHGAP42A6NI28 874 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 LRRC53A6NM62 1247 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 ZNF716A6NP11 495 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 E9PI62 339 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 I3L1I5 382 aaPredicted RBP4.51□□□□□ -1.69
CD44-202ENST00000278385 M0QYT0 321 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 PDHXO00330 501 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 PLK4O00444 970 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 CYR61O00622 381 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 DNALI1O14645 258 aaPredicted RBP4.51□□□□□ -1.69
CD44-202ENST00000278385 NVLO15381 856 aaKnown RBP4.51□□□□□ -1.69
CD44-202ENST00000278385 MED7O43513 233 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 SSX5O60225 188 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 CBFA2T3O75081 653 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 MED24O75448 989 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 SCGB2A1O75556 95 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 CIB2O75838 187 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 SERPING1P05155 500 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 ENO1P06733 434 aaKnown RBP4.51□□□□□ -1.69
CD44-202ENST00000278385 RHOP08100 348 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 SRPRAP08240 638 aaKnown RBP4.51□□□□□ -1.69
CD44-202ENST00000278385 VIMP08670 466 aaKnown RBP4.51□□□□□ -1.69
CD44-202ENST00000278385 ZNF735P0CB33 412 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 STAG3L3P0CL85 134 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 KRT3P12035 628 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 FUT1P19526 365 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 FDXRP22570 491 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 PCP4P48539 62 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 NDUFV1P49821 464 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 ZNF135P52742 658 aaPredicted RBP4.51□□□□□ -1.69
CD44-202ENST00000278385 ACTR3P61158 418 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 ABATP80404 500 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 TCF15Q12870 199 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 SPP2Q13103 211 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 KLF10Q13118 480 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 RUNX2Q13950 521 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 TOB2Q14106 344 aaPredicted RBP4.51□□□□□ -1.69
CD44-202ENST00000278385 UBXN2BQ14CS0 331 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 EPC2Q52LR7 807 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 TAF1BQ53T94 588 aaPredicted RBP4.51□□□□□ -1.69
CD44-202ENST00000278385 C6orf163Q5TEZ5 329 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 PRAMEF20Q5VT98 475 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 FAM160B1Q5W0V3 765 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 PMS2CLQ68D20 193 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 ANKS6Q68DC2 871 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 CRIP3Q6Q6R5 217 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 C17orf99Q6UX52 265 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 TMCO2Q7Z6W1 182 aaPredicted RBP4.51□□□□□ -1.69
CD44-202ENST00000278385 TADA2BQ86TJ2 420 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 COMTD1Q86VU5 262 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 SERPINA12Q8IW75 414 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 MFN1Q8IWA4 741 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 AKR7LQ8NHP1 331 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 SUN3Q8TAQ9 357 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 CD99L2Q8TCZ2 262 aa4.51□□□□□ -1.69
CD44-202ENST00000278385 RNASE8Q8TDE3 154 aaKnown RBP4.51□□□□□ -1.69
CD44-202ENST00000278385 NSMCE1Q8WV22 266 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms