RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 CST1P01037 141 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 PENKP01210 267 aaPredicted RBP16.29■□□□□ 0.2
VPS54-201ENST00000272322 TRIM60Q495X7 471 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 LDLRAP1Q5SW96 308 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 ADNP2Q6IQ32 1131 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 FAM180BQ6P0A1 224 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 XKR5Q6UX68 686 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 ANGPTL8Q6UXH0 198 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 HACD2Q6Y1H2 254 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 DPY19L3Q6ZPD9 716 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 HJURPQ8NCD3 748 aaPredicted RBP16.29■□□□□ 0.2
VPS54-201ENST00000272322 B4GALNT2Q8NHY0 566 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 SLC13A3Q8WWT9 602 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 TOP1MTQ969P6 601 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 MRPL17Q9NRX2 175 aaKnown RBP16.29■□□□□ 0.2
VPS54-201ENST00000272322 INSL5Q9Y5Q6 135 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 A0A1W2PPW3 197 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 WDR47O94967 919 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 GBAP04062 536 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 NTRK1P04629 796 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 ZUFSPQ96AP4 578 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 HSPBAP1Q96EW2 488 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 ANKRD60Q9BZ19 345 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 LINC00597Q9H2U6 94 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 PREBQ9HCU5 417 aa16.29■□□□□ 0.2
VPS54-201ENST00000272322 WARS2Q9UGM6 360 aaKnown RBP16.29■□□□□ 0.2
VPS54-201ENST00000272322 ZBBXA8MT70 800 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 HS6ST1O60243 411 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 STK16O75716 305 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 KCNH1O95259 989 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 CPSF4O95639 269 aaKnown RBP16.28■□□□□ 0.2
VPS54-201ENST00000272322 VAC14Q08AM6 782 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 UBE2R2Q712K3 238 aaPredicted RBP16.28■□□□□ 0.2
VPS54-201ENST00000272322 TMEM25Q86YD3 366 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 C2orf73Q8N5S3 287 aaPredicted RBP16.28■□□□□ 0.2
VPS54-201ENST00000272322 ZNF296Q8WUU4 475 aaPredicted RBP16.28■□□□□ 0.2
VPS54-201ENST00000272322 MED8Q96G25 268 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 CDK5RAP1Q96SZ6 601 aaKnown RBP16.28■□□□□ 0.2
VPS54-201ENST00000272322 ELOVL6Q9H5J4 265 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 LRTM1Q9HBL6 345 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 COMMD8Q9NX08 183 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 GNPTGQ9UJJ9 305 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 EIF3LQ9Y262 564 aaKnown RBP16.28■□□□□ 0.2
VPS54-201ENST00000272322 VPS4BO75351 444 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 PGRP06401 933 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 DGKAP23743 735 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 CCR7P32248 378 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 OGFOD2Q6N063 350 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 CRTC1Q6UUV9 634 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 KCTD8Q6ZWB6 473 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 SNX20Q7Z614 316 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 PTTG2Q9NZH5 202 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 NUDT4Q9NZJ9 180 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 RFPL2O75678 378 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 PDYNP01213 254 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 LHCGRP22888 699 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 GNPDA1P46926 289 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 CYBRD1Q53TN4 286 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 FRS2Q8WU20 508 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 MRPS31Q92665 395 aaKnown RBP16.28■□□□□ 0.2
VPS54-201ENST00000272322 CWH43Q9H720 699 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 CXorf21Q9HAI6 301 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 MRGBPQ9NV56 204 aa16.28■□□□□ 0.2
VPS54-201ENST00000272322 TCRBV5S2A0A599 114 aa16.27■□□□□ 0.2
VPS54-201ENST00000272322 ABCB1P08183 1280 aaPredicted RBP16.27■□□□□ 0.2
VPS54-201ENST00000272322 CDK4P11802 303 aa16.27■□□□□ 0.2
VPS54-201ENST00000272322 HLA-FP30511 346 aa16.27■□□□□ 0.2
VPS54-201ENST00000272322 LSM3P62310 102 aaKnown RBP16.27■□□□□ 0.2
VPS54-201ENST00000272322 C16orf72Q14CZ0 275 aa16.27■□□□□ 0.2
VPS54-201ENST00000272322 PTCHD3Q3KNS1 767 aa16.27■□□□□ 0.2
VPS54-201ENST00000272322 TMTC4Q5T4D3 741 aa16.27■□□□□ 0.2
VPS54-201ENST00000272322 TMEM126BQ8IUX1 230 aa16.27■□□□□ 0.2
VPS54-201ENST00000272322 C12orf43Q96C57 262 aaKnown RBP16.27■□□□□ 0.2
VPS54-201ENST00000272322 RHBDF1Q96CC6 855 aa16.27■□□□□ 0.2
VPS54-201ENST00000272322 ZNF583Q96ND8 569 aa16.27■□□□□ 0.2
VPS54-201ENST00000272322 NDUFA13Q9P0J0 144 aa16.27■□□□□ 0.2
VPS54-201ENST00000272322 FAF1Q9UNN5 650 aaPredicted RBP16.27■□□□□ 0.2
VPS54-201ENST00000272322 SHMT2P34897 504 aa16.27■□□□□ 0.19
VPS54-201ENST00000272322 CDKN2CP42773 168 aa16.27■□□□□ 0.19
VPS54-201ENST00000272322 MEP1AQ16819 746 aa16.27■□□□□ 0.19
VPS54-201ENST00000272322 PLEKHG6Q3KR16 790 aa16.27■□□□□ 0.19
VPS54-201ENST00000272322 Q6ZVL8 140 aa16.27■□□□□ 0.19
VPS54-201ENST00000272322 STK40Q8N2I9 435 aa16.27■□□□□ 0.19
VPS54-201ENST00000272322 GPR156Q8NFN8 814 aa16.27■□□□□ 0.19
VPS54-201ENST00000272322 COPS8Q99627 209 aa16.27■□□□□ 0.19
VPS54-201ENST00000272322 DPH2Q9BQC3 489 aaPredicted RBP16.27■□□□□ 0.19
VPS54-201ENST00000272322 BDH2Q9BUT1 245 aa16.27■□□□□ 0.19
VPS54-201ENST00000272322 CD244Q9BZW8 370 aa16.27■□□□□ 0.19
VPS54-201ENST00000272322 ATP13A3Q9H7F0 1226 aa16.27■□□□□ 0.19
VPS54-201ENST00000272322 SLC25A37Q9NYZ2 338 aa16.27■□□□□ 0.19
VPS54-201ENST00000272322 TDRKHQ9Y2W6 561 aaKnown RBP16.27■□□□□ 0.19
VPS54-201ENST00000272322 DGKBQ9Y6T7 804 aa16.27■□□□□ 0.19
VPS54-201ENST00000272322 CHD5Q8TDI0 1954 aa16.27■□□□□ 0.19
VPS54-201ENST00000272322 PABPN1LA6NDY0 278 aaKnown RBP16.27■□□□□ 0.19
VPS54-201ENST00000272322 PFDN1O60925 122 aa16.27■□□□□ 0.19
VPS54-201ENST00000272322 PRR35P0CG20 571 aa16.27■□□□□ 0.19
VPS54-201ENST00000272322 ACRV1P26436 265 aa16.27■□□□□ 0.19
VPS54-201ENST00000272322 ENTPD1P49961 510 aa16.27■□□□□ 0.19
VPS54-201ENST00000272322 EMX2Q04743 252 aa16.27■□□□□ 0.19
VPS54-201ENST00000272322 SIM2Q14190 667 aaPredicted RBP16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms