RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 FGF5P12034 268 aa22.28■■□□□ 1.16
LSM4-201ENST00000252816 RPS3P23396 243 aaKnown RBP eCLIP22.28■■□□□ 1.163e-7■□□□□ 8.1
LSM4-201ENST00000252816 EIF3BP55884 814 aaKnown RBP22.28■■□□□ 1.16
LSM4-201ENST00000252816 PTK6Q13882 451 aa22.28■■□□□ 1.16
LSM4-201ENST00000252816 CTSL3PQ5NE16 218 aa22.28■■□□□ 1.16
LSM4-201ENST00000252816 LRRC6Q86X45 466 aa22.28■■□□□ 1.16
LSM4-201ENST00000252816 KMT5CQ86Y97 462 aa22.28■■□□□ 1.16
LSM4-201ENST00000252816 PPIL6Q8IXY8 311 aa22.28■■□□□ 1.16
LSM4-201ENST00000252816 TBC1D21Q8IYX1 336 aa22.28■■□□□ 1.16
LSM4-201ENST00000252816 ADGRF3Q8IZF5 1079 aa22.28■■□□□ 1.16
LSM4-201ENST00000252816 NLGN4XQ8N0W4 816 aa22.28■■□□□ 1.16
LSM4-201ENST00000252816 D2HGDHQ8N465 521 aa22.28■■□□□ 1.16
LSM4-201ENST00000252816 NLGN4YQ8NFZ3 816 aaPredicted RBP22.28■■□□□ 1.16
LSM4-201ENST00000252816 OR5K2Q8NHB8 316 aa22.28■■□□□ 1.16
LSM4-201ENST00000252816 ASZ1Q8WWH4 475 aa22.28■■□□□ 1.16
LSM4-201ENST00000252816 LPGAT1Q92604 370 aa22.28■■□□□ 1.16
LSM4-201ENST00000252816 ZNF669Q96BR6 464 aaPredicted RBP22.28■■□□□ 1.16
LSM4-201ENST00000252816 SIGLEC10Q96LC7 697 aa22.28■■□□□ 1.16
LSM4-201ENST00000252816 BIRC8Q96P09 236 aa22.28■■□□□ 1.16
LSM4-201ENST00000252816 TRIT1Q9H3H1 467 aaKnown RBP22.28■■□□□ 1.16
LSM4-201ENST00000252816 ASIC3Q9UHC3 531 aa22.28■■□□□ 1.16
LSM4-201ENST00000252816 GNPTGQ9UJJ9 305 aa22.28■■□□□ 1.16
LSM4-201ENST00000252816 PCDHGA4Q9Y5G9 962 aa22.28■■□□□ 1.16
LSM4-201ENST00000252816 MAGEB16A2A368 324 aa22.27■■□□□ 1.16
LSM4-201ENST00000252816 CTAGE9A4FU28 777 aa22.27■■□□□ 1.16
LSM4-201ENST00000252816 SLCO2B1O94956 709 aa22.27■■□□□ 1.16
LSM4-201ENST00000252816 ZBTB11O95625 1053 aaPredicted RBP22.27■■□□□ 1.16
LSM4-201ENST00000252816 LIFP15018 202 aa22.27■■□□□ 1.16
LSM4-201ENST00000252816 PRDX3P30048 256 aaKnown RBP22.27■■□□□ 1.16
LSM4-201ENST00000252816 HSD11B2P80365 405 aa22.27■■□□□ 1.16
LSM4-201ENST00000252816 DHX34Q14147 1143 aaKnown RBP22.27■■□□□ 1.16
LSM4-201ENST00000252816 NEPROQ6NW34 567 aa22.27■■□□□ 1.16
LSM4-201ENST00000252816 SDCCAG8Q86SQ7 713 aaPredicted RBP22.27■■□□□ 1.16
LSM4-201ENST00000252816 TMEM135Q86UB9 458 aa22.27■■□□□ 1.16
LSM4-201ENST00000252816 ULBP3Q9BZM4 244 aa22.27■■□□□ 1.16
LSM4-201ENST00000252816 TDRKHQ9Y2W6 561 aaKnown RBP22.27■■□□□ 1.16
LSM4-201ENST00000252816 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP22.27■■□□□ 1.16
LSM4-201ENST00000252816 RPS6KL1Q9Y6S9 549 aa22.27■■□□□ 1.16
LSM4-201ENST00000252816 ZCWPW2A0A1B0GU75 182 aa22.26■■□□□ 1.15
LSM4-201ENST00000252816 MATN2O00339 956 aa22.26■■□□□ 1.15
LSM4-201ENST00000252816 DNALI1O14645 258 aaPredicted RBP22.26■■□□□ 1.15
LSM4-201ENST00000252816 SPAG6O75602 509 aa22.26■■□□□ 1.15
LSM4-201ENST00000252816 TIAF1O95411 115 aa22.26■■□□□ 1.15
LSM4-201ENST00000252816 APOA4P06727 396 aa22.26■■□□□ 1.15
LSM4-201ENST00000252816 PAMP19021 973 aa22.26■■□□□ 1.15
LSM4-201ENST00000252816 IVDP26440 423 aa22.26■■□□□ 1.15
LSM4-201ENST00000252816 MAP4P27816 1152 aaKnown RBP22.26■■□□□ 1.15
LSM4-201ENST00000252816 FMO4P31512 558 aa22.26■■□□□ 1.15
LSM4-201ENST00000252816 ARL4DP49703 201 aa22.26■■□□□ 1.15
LSM4-201ENST00000252816 RHDQ02161 417 aa22.26■■□□□ 1.15
LSM4-201ENST00000252816 TUBB3Q13509 450 aa22.26■■□□□ 1.15
LSM4-201ENST00000252816 UNC5AQ6ZN44 842 aa22.26■■□□□ 1.15
LSM4-201ENST00000252816 CENPUQ71F23 418 aa22.26■■□□□ 1.15
LSM4-201ENST00000252816 CILP2Q8IUL8 1156 aa22.26■■□□□ 1.15
LSM4-201ENST00000252816 RASGRP3Q8IV61 690 aa22.26■■□□□ 1.15
LSM4-201ENST00000252816 KLHL7Q8IXQ5 586 aa22.26■■□□□ 1.15
LSM4-201ENST00000252816 CARFQ8N187 725 aa22.26■■□□□ 1.15
LSM4-201ENST00000252816 TTC9Q92623 222 aa22.26■■□□□ 1.15
LSM4-201ENST00000252816 TCF12Q99081 682 aa22.26■■□□□ 1.15
LSM4-201ENST00000252816 C1GALT1Q9NS00 363 aa22.26■■□□□ 1.15
LSM4-201ENST00000252816 ACTR10Q9NZ32 417 aa22.26■■□□□ 1.15
LSM4-201ENST00000252816 POLG2Q9UHN1 485 aa22.26■■□□□ 1.15
LSM4-201ENST00000252816 PLAGL1Q9UM63 463 aa22.26■■□□□ 1.15
LSM4-201ENST00000252816 KALRNO60229 2985 aa22.25■■□□□ 1.15
LSM4-201ENST00000252816 LOC101059948A0A1B0GTJ6 334 aa22.25■■□□□ 1.15
LSM4-201ENST00000252816 SLC9B1P1A6NJY1 282 aa22.25■■□□□ 1.15
LSM4-201ENST00000252816 ATXN7O15265 892 aaPredicted RBP22.25■■□□□ 1.15
LSM4-201ENST00000252816 KIAA0754O94854 1291 aa22.25■■□□□ 1.15
LSM4-201ENST00000252816 F7P08709 466 aaPredicted RBP22.25■■□□□ 1.15
LSM4-201ENST00000252816 OGNP20774 298 aaKnown RBP22.25■■□□□ 1.15
LSM4-201ENST00000252816 CDH3P22223 829 aa22.25■■□□□ 1.15
LSM4-201ENST00000252816 ABRQ12979 859 aa22.25■■□□□ 1.15
LSM4-201ENST00000252816 LARP7Q4G0J3 582 aaKnown RBP eCLIP22.25■■□□□ 1.15
LSM4-201ENST00000252816 DNAJC21Q5F1R6 531 aaKnown RBP22.25■■□□□ 1.15
LSM4-201ENST00000252816 ZNF789Q5FWF6 425 aa22.25■■□□□ 1.15
LSM4-201ENST00000252816 RNF187Q5TA31 235 aaPredicted RBP22.25■■□□□ 1.15
LSM4-201ENST00000252816 PPP1R3BQ86XI6 285 aa22.25■■□□□ 1.15
LSM4-201ENST00000252816 UNC5BQ8IZJ1 945 aa22.25■■□□□ 1.15
LSM4-201ENST00000252816 C17orf53Q8N3J3 647 aaPredicted RBP22.25■■□□□ 1.15
LSM4-201ENST00000252816 PANX3Q96QZ0 392 aa22.25■■□□□ 1.15
LSM4-201ENST00000252816 PDE7BQ9NP56 450 aa22.25■■□□□ 1.15
LSM4-201ENST00000252816 FGF21Q9NSA1 209 aa22.25■■□□□ 1.15
LSM4-201ENST00000252816 RARRES3Q9UL19 164 aa22.25■■□□□ 1.15
LSM4-201ENST00000252816 BTRCQ9Y297 605 aa22.25■■□□□ 1.15
LSM4-201ENST00000252816 CRYL1Q9Y2S2 319 aa22.25■■□□□ 1.15
LSM4-201ENST00000252816 MAD1L1Q9Y6D9 718 aa22.25■■□□□ 1.15
LSM4-201ENST00000252816 ERVH48-1M5A8F1 160 aa22.24■■□□□ 1.15
LSM4-201ENST00000252816 NIPSNAP2O75323 286 aa22.24■■□□□ 1.15
LSM4-201ENST00000252816 ST6GAL1P15907 406 aa22.24■■□□□ 1.15
LSM4-201ENST00000252816 SHMT2P34897 504 aa22.24■■□□□ 1.15
LSM4-201ENST00000252816 CYP4F2P78329 520 aa22.24■■□□□ 1.15
LSM4-201ENST00000252816 ACY1Q03154 408 aa22.24■■□□□ 1.15
LSM4-201ENST00000252816 MAP7Q14244 749 aa22.24■■□□□ 1.15
LSM4-201ENST00000252816 TMED2Q15363 201 aa22.24■■□□□ 1.15
LSM4-201ENST00000252816 GPR19Q15760 415 aa22.24■■□□□ 1.15
LSM4-201ENST00000252816 ZNF470Q6ECI4 717 aa22.24■■□□□ 1.15
LSM4-201ENST00000252816 PWWP2BQ6NUJ5 590 aa22.24■■□□□ 1.15
LSM4-201ENST00000252816 GALNT6Q8NCL4 622 aa22.24■■□□□ 1.15
LSM4-201ENST00000252816 CFAP61Q8NHU2 1237 aa22.24■■□□□ 1.15
LSM4-201ENST00000252816 PITPNM3Q9BZ71 974 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms