RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 LARS2Q15031 903 aaKnown RBP13.39□□□□□ -0.27
LDLR-201ENST00000252444 PDCD4Q53EL6 469 aaKnown RBP13.39□□□□□ -0.27
LDLR-201ENST00000252444 C2orf27AQ580R0 203 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 ZBTB49Q6ZSB9 765 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 OR52L1Q8NGH7 329 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 HS3ST2Q9Y278 367 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 C9J4A7 227 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 PRAMEF26H0Y7S4 382 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 ANXA4P09525 319 aaPredicted RBP13.39□□□□□ -0.27
LDLR-201ENST00000252444 NR2F1P10589 423 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 TCF3P15923 654 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 TTKP33981 857 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 TRPC1P48995 793 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 MANFP55145 182 aaKnown RBP13.39□□□□□ -0.27
LDLR-201ENST00000252444 KLF10Q13118 480 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 CYTH1Q15438 398 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 RSPO2Q6UXX9 243 aaPredicted RBP13.39□□□□□ -0.27
LDLR-201ENST00000252444 ZDHHC13Q8IUH4 622 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 SPPL2AQ8TCT8 520 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 CDRT15Q96T59 188 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 GPR34Q9UPC5 381 aa13.39□□□□□ -0.27
LDLR-201ENST00000252444 TMEM150CB9EJG8 249 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 SLC31A1O15431 190 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 GPIP06744 558 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 ATF6P18850 670 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 FDXRP22570 491 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 CRATP43155 626 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 TAS2R50P59544 299 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 MLLT1Q03111 559 aaPredicted RBP13.38□□□□□ -0.27
LDLR-201ENST00000252444 SLC9A5Q14940 896 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 TMEM44Q2T9K0 475 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 DPY19L3Q6ZPD9 716 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 CHST15Q7LFX5 561 aaPredicted RBP13.38□□□□□ -0.27
LDLR-201ENST00000252444 C10orf53Q8N6V4 93 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 OR6Y1Q8NGX8 325 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 COPS7AQ9UBW8 275 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 CD84Q9UIB8 345 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 OR10H1Q9Y4A9 318 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 SEC24AO95486 1093 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 OCM2P0CE71 109 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 OCMP0CE72 109 aaPredicted RBP13.38□□□□□ -0.27
LDLR-201ENST00000252444 HSPA7P48741 367 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 DCDC1P59894 354 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 STX4Q12846 297 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 TMEM115Q12893 351 aaPredicted RBP13.38□□□□□ -0.27
LDLR-201ENST00000252444 SIX1Q15475 284 aaPredicted RBP13.38□□□□□ -0.27
LDLR-201ENST00000252444 TMEM35AQ53FP2 167 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 TTC33Q6PID6 262 aaPredicted RBP13.38□□□□□ -0.27
LDLR-201ENST00000252444 CAND1Q86VP6 1230 aaKnown RBP13.38□□□□□ -0.27
LDLR-201ENST00000252444 DENND6AQ8IWF6 608 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 TEX26Q8N6G2 289 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 SLC5A11Q8WWX8 675 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 CDK5RAP2Q96SN8 1893 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 MEIS3P2A8K0S8 358 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 HHLA1C9JL84 531 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 HIST1H2ABP04908 130 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 ADRB3P13945 408 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 DHPSP49366 369 aaPredicted RBP13.38□□□□□ -0.27
LDLR-201ENST00000252444 PLA2G4EQ3MJ16 856 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 ARL13AQ5H913 290 aaPredicted RBP13.38□□□□□ -0.27
LDLR-201ENST00000252444 HIST3H2AQ7L7L0 130 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 HIST1H2ACQ93077 130 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 ZFRQ96KR1 1074 aaKnown RBP13.38□□□□□ -0.27
LDLR-201ENST00000252444 ADNPQ9H2P0 1102 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 NEUROD4Q9HD90 331 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 A0A0D9SEW6 157 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 CACNG3O60359 315 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 SPINT3P49223 89 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 YPEL5P62699 121 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 LRRC23Q53EV4 343 aaPredicted RBP13.38□□□□□ -0.27
LDLR-201ENST00000252444 RANBP10Q6VN20 620 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 PWWP2AQ96N64 755 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 CD244Q9BZW8 370 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 DPEP2Q9H4A9 486 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 SMURF2Q9HAU4 748 aa13.38□□□□□ -0.27
LDLR-201ENST00000252444 TNFRSF10BO14763 440 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 PDPK1O15530 556 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 DFNA5O60443 496 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 LINC00032P0C843 101 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 CHRNA4P43681 627 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 GPX6P59796 221 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 HNRNPKP61978 463 aaKnown RBP eCLIP13.37□□□□□ -0.274e-6■■■■□ 21.9
LDLR-201ENST00000252444 RPS14P62263 151 aaKnown RBP13.37□□□□□ -0.27
LDLR-201ENST00000252444 NIPAL4Q0D2K0 466 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 ARHGAP19Q14CB8 494 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 ZSWIM7Q19AV6 140 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 TFGQ92734 400 aaPredicted RBP13.37□□□□□ -0.27
LDLR-201ENST00000252444 HDAC8Q9BY41 377 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 CCDC90BQ9GZT6 254 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 RDH14Q9HBH5 336 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 FAM120CQ9NX05 1096 aaKnown RBP13.37□□□□□ -0.27
LDLR-201ENST00000252444 GGT7Q9UJ14 662 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 FFAR3O14843 346 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 GPR42O15529 346 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 MMP20O60882 483 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 ZDHHC11BP0C7U3 371 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 ITPKAP23677 461 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 EEFSECP57772 596 aaKnown RBP13.37□□□□□ -0.27
LDLR-201ENST00000252444 KDELC1Q6UW63 502 aa13.37□□□□□ -0.27
LDLR-201ENST00000252444 USP30Q70CQ3 517 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms