RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 SRP54P61011 504 aaKnown RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 FOXO1Q12778 655 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 PFKFB4Q16877 469 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 RANBP10Q6VN20 620 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 TTLL10Q6ZVT0 673 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 SLC16A13Q7RTY0 426 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 ZCCHC9Q8N567 271 aaKnown RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 OR10H5Q8NGA6 315 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 OR4C5Q8NGB2 326 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 TCTEX1D2Q8WW35 142 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 TNFRSF14Q92956 283 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 APIPQ96GX9 242 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 DMRTA2Q96SC8 542 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 FBXO44Q9H4M3 255 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 MEAF6Q9HAF1 191 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 SNX15Q9NRS6 342 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 TAS2R1Q9NYW7 299 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 MAP3K2Q9Y2U5 619 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 LRRC42Q9Y546 428 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 F8P00451 2351 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 CDK5RAP2Q96SN8 1893 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 C5orf60A6NFR6 353 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 MMP8P22894 467 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 STOMP27105 288 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 LEPRP48357 1165 aaKnown RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF252P-AS1Q0IIN9 211 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 PTGDRQ13258 359 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 SLC36A3Q495N2 470 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 BCL7AQ4VC05 210 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 RAET1LQ5VY80 246 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 SMARCD3Q6STE5 483 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 KIAA0907Q7Z7F0 614 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 SMYD4Q8IYR2 804 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 MCUQ8NE86 351 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 C18orf25Q96B23 403 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 PBKQ96KB5 322 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 CATSPERBQ9H7T0 1116 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 PARD6AQ9NPB6 346 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 POU2F3Q9UKI9 436 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 SSR3Q9UNL2 185 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 DBX1A6NMT0 343 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 POLRMTO00411 1230 aaKnown RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 EIF1AYO14602 144 aaKnown RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 LCMT2O60294 686 aaKnown RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 RLN1P04808 185 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 OR52Z1P0C646 297 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 GNPDA1P46926 289 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 GANABQ14697 944 aaKnown RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 GRK1Q15835 563 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 METAP1DQ6UB28 335 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 FSTL5Q8N475 847 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 WDTC1Q8N5D0 677 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 HLA-CQ95604 372 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 HMCESQ96FZ2 354 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 DCLRE1CQ96SD1 692 aaKnown RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 CBWD1Q9BRT8 395 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 TIPINQ9BVW5 301 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 REEP4Q9H6H4 257 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 C14orf105Q9NVL8 296 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 NCKAP1Q9Y2A7 1128 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 PCDHB2Q9Y5E7 798 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 WNK3Q9BYP7 1800 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 GPR171O14626 319 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 ATXN7O15265 892 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 DLDP09622 509 aaKnown RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 OTX2P32243 289 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 ALDH3A2P51648 485 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 PRKAG1P54619 331 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 RAB5BP61020 215 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 VAMP3Q15836 100 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 SLC15A2Q16348 729 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 ALKBH6Q3KRA9 238 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 HSDL1Q3SXM5 330 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 CLEC12AQ5QGZ9 265 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 TTC23Q5W5X9 447 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 NUDT10Q8NFP7 164 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 OR10Z1Q8NGY1 313 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 BRIX1Q8TDN6 353 aaKnown RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 MRPL4Q9BYD3 311 aaKnown RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 RNPEPL1Q9HAU8 725 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 GPN1Q9HCN4 374 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 TBC1D30Q9Y2I9 924 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 SUPT7LO94864 414 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 POU3F3P20264 500 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 CCND3P30281 292 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 PLEKHG7Q6ZR37 379 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 SYT13Q7L8C5 426 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 LINGO2Q7L985 606 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 GPBP1Q86WP2 473 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 TBC1D16Q8TBP0 767 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 TSSK1BQ9BXA7 367 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 PKIBQ9C010 78 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF768Q9H5H4 540 aaKnown RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 OSGEPQ9NPF4 335 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 MED13Q9UHV7 2174 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 LRRK1Q38SD2 2015 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 F5P12259 2224 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF213O14771 459 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 ERN1O75460 977 aaKnown RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 PRR35P0CG20 571 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms