RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 TBRG4Q969Z0 631 aaKnown RBP eCLIP18.74■□□□□ 0.59
CLN3-260ENST00000637578 CD180Q99467 661 aa18.74■□□□□ 0.59
CLN3-260ENST00000637578 IL22Q9GZX6 179 aa18.74■□□□□ 0.59
CLN3-260ENST00000637578 TREX1Q9NSU2 369 aa18.74■□□□□ 0.59
CLN3-260ENST00000637578 HRASLS2Q9NWW9 162 aa18.74■□□□□ 0.59
CLN3-260ENST00000637578 PCDHGA4Q9Y5G9 962 aa18.74■□□□□ 0.59
CLN3-260ENST00000637578 IGHV5-51A0A0C4DH38 117 aa18.73■□□□□ 0.59
CLN3-260ENST00000637578 OR1I1O60431 355 aa18.73■□□□□ 0.59
CLN3-260ENST00000637578 RAD1O60671 282 aa18.73■□□□□ 0.59
CLN3-260ENST00000637578 DLGAP3O95886 979 aa18.73■□□□□ 0.59
CLN3-260ENST00000637578 IVDP26440 423 aa18.73■□□□□ 0.59
CLN3-260ENST00000637578 KIAA1614Q5VZ46 1190 aa18.73■□□□□ 0.59
CLN3-260ENST00000637578 TIPARPQ7Z3E1 657 aaKnown RBP18.73■□□□□ 0.59
CLN3-260ENST00000637578 KMT5CQ86Y97 462 aa18.73■□□□□ 0.59
CLN3-260ENST00000637578 CACNA2D3Q8IZS8 1091 aa18.73■□□□□ 0.59
CLN3-260ENST00000637578 ACVR1CQ8NER5 493 aa18.73■□□□□ 0.59
CLN3-260ENST00000637578 PPHLN1Q8NEY8 458 aaKnown RBP18.73■□□□□ 0.59
CLN3-260ENST00000637578 TTC1Q99614 292 aa18.73■□□□□ 0.59
CLN3-260ENST00000637578 TLCD2A6NGC4 264 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 STK17BO94768 372 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 TMEM63AO94886 807 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 FTH1P02794 183 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 FGF5P12034 268 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 MAP4P27816 1152 aaKnown RBP18.72■□□□□ 0.59
CLN3-260ENST00000637578 PREPP48147 710 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 SESN2P58004 480 aaPredicted RBP18.72■□□□□ 0.59
CLN3-260ENST00000637578 MAP7Q14244 749 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 SEMA3AQ14563 771 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 DNTTIP2Q5QJE6 756 aaKnown RBP18.72■□□□□ 0.59
CLN3-260ENST00000637578 LRRC8BQ6P9F7 803 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 ZNF449Q6P9G9 518 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 MAATS1Q7Z4T9 603 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 OOSP2Q86WS3 158 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 NLGN4XQ8N0W4 816 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 CARFQ8N187 725 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 NLGN4YQ8NFZ3 816 aaPredicted RBP18.72■□□□□ 0.59
CLN3-260ENST00000637578 OR6P1Q8NGX9 317 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 OR6C1Q96RD1 312 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 MAP3K3Q99759 626 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 KIFC1Q9BW19 673 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 TFB2MQ9H5Q4 396 aaKnown RBP18.72■□□□□ 0.59
CLN3-260ENST00000637578 MVB12BQ9H7P6 319 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 PIKFYVEQ9Y2I7 2098 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 SLC5A10A0PJK1 596 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 CTAGE15A4D2H0 777 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 OR6C74A6NCV1 312 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 FAM187AA6NFU0 413 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 IFRD1O00458 451 aaPredicted RBP18.72■□□□□ 0.59
CLN3-260ENST00000637578 OR56A5P0C7T3 313 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 CTAGE8P0CG41 777 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 ACADLP28330 430 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 PRAMEP78395 509 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 CRADDP78560 199 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 PLOD1Q02809 727 aaPredicted RBP18.72■□□□□ 0.59
CLN3-260ENST00000637578 FOXM1Q08050 763 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 BOP1Q14137 746 aaKnown RBP18.72■□□□□ 0.59
CLN3-260ENST00000637578 RNASEH2BQ5TBB1 312 aaKnown RBP18.72■□□□□ 0.59
CLN3-260ENST00000637578 ARMC3Q5W041 872 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 CTAGE6Q86UF2 777 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 CTAGE4Q8IX94 777 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 IL22RA1Q8N6P7 574 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 OR4E2Q8NGC2 313 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 TFGQ92734 400 aaPredicted RBP18.72■□□□□ 0.59
CLN3-260ENST00000637578 FERD3LQ96RJ6 166 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 TRIM31Q9BZY9 425 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 TRIT1Q9H3H1 467 aaKnown RBP18.72■□□□□ 0.59
CLN3-260ENST00000637578 MRM3Q9HC36 420 aaKnown RBP18.72■□□□□ 0.59
CLN3-260ENST00000637578 WDR70Q9NW82 654 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 BFARQ9NZS9 450 aa18.72■□□□□ 0.59
CLN3-260ENST00000637578 DNALI1O14645 258 aaPredicted RBP18.71■□□□□ 0.59
CLN3-260ENST00000637578 LIFP15018 202 aa18.71■□□□□ 0.59
CLN3-260ENST00000637578 KRT33BQ14525 404 aa18.71■□□□□ 0.59
CLN3-260ENST00000637578 LARP7Q4G0J3 582 aaKnown RBP eCLIP18.71■□□□□ 0.59
CLN3-260ENST00000637578 FASTKD1Q53R41 847 aaKnown RBP18.71■□□□□ 0.59
CLN3-260ENST00000637578 IZUMO3Q5VZ72 239 aa18.71■□□□□ 0.59
CLN3-260ENST00000637578 PPIL6Q8IXY8 311 aa18.71■□□□□ 0.59
CLN3-260ENST00000637578 CEP112Q8N8E3 955 aa18.71■□□□□ 0.59
CLN3-260ENST00000637578 NAT8LQ8N9F0 302 aa18.71■□□□□ 0.59
CLN3-260ENST00000637578 ZSCAN1Q8NBB4 408 aa18.71■□□□□ 0.59
CLN3-260ENST00000637578 NOA1Q8NC60 698 aaKnown RBP18.71■□□□□ 0.59
CLN3-260ENST00000637578 PHC3Q8NDX5 983 aa18.71■□□□□ 0.59
CLN3-260ENST00000637578 SLC12A9Q9BXP2 914 aa18.71■□□□□ 0.59
CLN3-260ENST00000637578 MARCH4Q9P2E8 410 aaPredicted RBP18.71■□□□□ 0.59
CLN3-260ENST00000637578 EFCAB8A8MWE9 144 aa18.7■□□□□ 0.58
CLN3-260ENST00000637578 BHMG1C9JSJ3 638 aaPredicted RBP18.7■□□□□ 0.58
CLN3-260ENST00000637578 C1QL1O75973 258 aa18.7■□□□□ 0.58
CLN3-260ENST00000637578 ITGB2P05107 769 aa18.7■□□□□ 0.58
CLN3-260ENST00000637578 FOLR1P15328 257 aa18.7■□□□□ 0.58
CLN3-260ENST00000637578 PPARGP37231 505 aaPredicted RBP18.7■□□□□ 0.58
CLN3-260ENST00000637578 KPNA2P52292 529 aaKnown RBP18.7■□□□□ 0.58
CLN3-260ENST00000637578 ABHD18Q0P651 414 aa18.7■□□□□ 0.58
CLN3-260ENST00000637578 AARS2Q5JTZ9 985 aaKnown RBP18.7■□□□□ 0.58
CLN3-260ENST00000637578 BPHLQ86WA6 291 aaPredicted RBP18.7■□□□□ 0.58
CLN3-260ENST00000637578 D2HGDHQ8N465 521 aa18.7■□□□□ 0.58
CLN3-260ENST00000637578 LCN9Q8WX39 176 aa18.7■□□□□ 0.58
CLN3-260ENST00000637578 ELMO1Q92556 727 aa18.7■□□□□ 0.58
CLN3-260ENST00000637578 FCRL4Q96PJ5 515 aa18.7■□□□□ 0.58
CLN3-260ENST00000637578 CARD6Q9BX69 1037 aa18.7■□□□□ 0.58
CLN3-260ENST00000637578 L2HGDHQ9H9P8 463 aa18.7■□□□□ 0.58
CLN3-260ENST00000637578 CATSPERZQ9NTU4 200 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms