RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 WDFY3Q8IZQ1 3526 aa20.19■□□□□ 0.82
CLN3-240ENST00000631023 MN1Q10571 1320 aaPredicted RBP20.18■□□□□ 0.82
CLN3-240ENST00000631023 BHMG1C9JSJ3 638 aaPredicted RBP20.18■□□□□ 0.82
CLN3-240ENST00000631023 TNFSF15O95150 251 aa20.18■□□□□ 0.82
CLN3-240ENST00000631023 ITGA2BP08514 1039 aa20.18■□□□□ 0.82
CLN3-240ENST00000631023 CSE1LP55060 971 aaKnown RBP20.18■□□□□ 0.82
CLN3-240ENST00000631023 PDIA2Q13087 525 aaKnown RBP20.18■□□□□ 0.82
CLN3-240ENST00000631023 CTBP1Q13363 440 aa20.18■□□□□ 0.82
CLN3-240ENST00000631023 C16orf72Q14CZ0 275 aa20.18■□□□□ 0.82
CLN3-240ENST00000631023 TBC1D25Q3MII6 688 aa20.18■□□□□ 0.82
CLN3-240ENST00000631023 HP1BP3Q5SSJ5 553 aaPredicted RBP20.18■□□□□ 0.82
CLN3-240ENST00000631023 NAPRTQ6XQN6 538 aa20.18■□□□□ 0.82
CLN3-240ENST00000631023 IGDCC3Q8IVU1 814 aa20.18■□□□□ 0.82
CLN3-240ENST00000631023 DENND6AQ8IWF6 608 aa20.18■□□□□ 0.82
CLN3-240ENST00000631023 SLC22A15Q8IZD6 547 aa20.18■□□□□ 0.82
CLN3-240ENST00000631023 PHC3Q8NDX5 983 aa20.18■□□□□ 0.82
CLN3-240ENST00000631023 RSC1A1Q92681 617 aa20.18■□□□□ 0.82
CLN3-240ENST00000631023 FGF11Q92914 225 aa20.18■□□□□ 0.82
CLN3-240ENST00000631023 EPHA6Q9UF33 1036 aa20.18■□□□□ 0.82
CLN3-240ENST00000631023 FBXO5Q9UKT4 447 aa20.18■□□□□ 0.82
CLN3-240ENST00000631023 CHMP2BQ9UQN3 213 aa20.18■□□□□ 0.82
CLN3-240ENST00000631023 MRFAP1Q9Y605 127 aa20.18■□□□□ 0.82
CLN3-240ENST00000631023 PCM1Q15154 2024 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 A8MU76 341 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 CAPN5O15484 640 aaPredicted RBP20.17■□□□□ 0.82
CLN3-240ENST00000631023 GPC4O75487 556 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 SLCO2B1O94956 709 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 C9P02748 559 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 PKMP14618 531 aaKnown RBP20.17■□□□□ 0.82
CLN3-240ENST00000631023 ACADLP28330 430 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 CAV1Q03135 178 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 CTSL3PQ5NE16 218 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 ARMC6Q6NXE6 501 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 C8orf74Q6P047 294 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 ARHGAP22Q7Z5H3 698 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 TBC1D21Q8IYX1 336 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 LKAAEAR1Q8TD35 194 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 CFAP36Q96G28 342 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 PRR11Q96HE9 360 aaPredicted RBP20.17■□□□□ 0.82
CLN3-240ENST00000631023 TGM7Q96PF1 710 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 TRIT1Q9H3H1 467 aaKnown RBP20.17■□□□□ 0.82
CLN3-240ENST00000631023 IARS2Q9NSE4 1012 aaKnown RBP20.17■□□□□ 0.82
CLN3-240ENST00000631023 PISDQ9UG56 409 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 KLHL3Q9UH77 587 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 POLG2Q9UHN1 485 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 ZMIZ1Q9ULJ6 1067 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 AHCTF1Q8WYP5 2266 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 E5RI56 91 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 E7ESA3 106 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 AGRPO00253 132 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 TOX3O15405 576 aaPredicted RBP20.17■□□□□ 0.82
CLN3-240ENST00000631023 ERVK-10P10266 1014 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 CHRM3P20309 590 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 CBLBQ13191 982 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 PLEKHS1Q5SXH7 462 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 IRGCQ6NXR0 463 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 OOSP2Q86WS3 158 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 LCN9Q8WX39 176 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 JPH3Q8WXH2 748 aaPredicted RBP20.17■□□□□ 0.82
CLN3-240ENST00000631023 CERS2Q96G23 380 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 C9orf72Q96LT7 481 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 SRMSQ9H3Y6 488 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 ASCL3Q9NQ33 180 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 PPANQ9NQ55 473 aaKnown RBP20.17■□□□□ 0.82
CLN3-240ENST00000631023 HRASLS2Q9NWW9 162 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 COMMD10Q9Y6G5 202 aa20.17■□□□□ 0.82
CLN3-240ENST00000631023 KDM1AO60341 852 aa20.16■□□□□ 0.82
CLN3-240ENST00000631023 RPN2P04844 631 aa20.16■□□□□ 0.82
CLN3-240ENST00000631023 HGFP14210 728 aa20.16■□□□□ 0.82
CLN3-240ENST00000631023 SLC1A2P43004 574 aa20.16■□□□□ 0.82
CLN3-240ENST00000631023 GFERP55789 205 aa20.16■□□□□ 0.82
CLN3-240ENST00000631023 UNC5AQ6ZN44 842 aa20.16■□□□□ 0.82
CLN3-240ENST00000631023 UNC5BQ8IZJ1 945 aa20.16■□□□□ 0.82
CLN3-240ENST00000631023 OR4E2Q8NGC2 313 aa20.16■□□□□ 0.82
CLN3-240ENST00000631023 TFB2MQ9H5Q4 396 aaKnown RBP20.16■□□□□ 0.82
CLN3-240ENST00000631023 FBXO6Q9NRD1 293 aaPredicted RBP20.16■□□□□ 0.82
CLN3-240ENST00000631023 CDYLQ9Y232 598 aa20.16■□□□□ 0.82
CLN3-240ENST00000631023 ANKRD12Q6UB98 2062 aa20.16■□□□□ 0.82
CLN3-240ENST00000631023 PMS2P1A4D2B8 440 aa20.15■□□□□ 0.82
CLN3-240ENST00000631023 OR5K3A6NET4 321 aa20.15■□□□□ 0.82
CLN3-240ENST00000631023 NIPSNAP2O75323 286 aa20.15■□□□□ 0.82
CLN3-240ENST00000631023 RASSF9O75901 435 aa20.15■□□□□ 0.82
CLN3-240ENST00000631023 ANKRD34CP0C6C1 535 aa20.15■□□□□ 0.82
CLN3-240ENST00000631023 PRKAA1Q13131 559 aa20.15■□□□□ 0.82
CLN3-240ENST00000631023 PRKG2Q13237 762 aa20.15■□□□□ 0.82
CLN3-240ENST00000631023 ZNF789Q5FWF6 425 aa20.15■□□□□ 0.82
CLN3-240ENST00000631023 TMEM164Q5U3C3 297 aa20.15■□□□□ 0.82
CLN3-240ENST00000631023 STEAP4Q687X5 459 aa20.15■□□□□ 0.82
CLN3-240ENST00000631023 KIAA0408Q6ZU52 694 aa20.15■□□□□ 0.82
CLN3-240ENST00000631023 ANKMY2Q8IV38 441 aa20.15■□□□□ 0.82
CLN3-240ENST00000631023 FBXO36Q8NEA4 188 aa20.15■□□□□ 0.82
CLN3-240ENST00000631023 OR5AR1Q8NGP9 310 aa20.15■□□□□ 0.82
CLN3-240ENST00000631023 OR5K2Q8NHB8 316 aa20.15■□□□□ 0.82
CLN3-240ENST00000631023 HGH1Q9BTY7 390 aa20.15■□□□□ 0.82
CLN3-240ENST00000631023 LATS2Q9NRM7 1088 aa20.15■□□□□ 0.82
CLN3-240ENST00000631023 GRHL1Q9NZI5 618 aa20.15■□□□□ 0.82
CLN3-240ENST00000631023 USP24Q9UPU5 2620 aa20.15■□□□□ 0.82
CLN3-240ENST00000631023 CTAGE15A4D2H0 777 aa20.14■□□□□ 0.81
CLN3-240ENST00000631023 OR6C74A6NCV1 312 aa20.14■□□□□ 0.81
CLN3-240ENST00000631023 CDRT15L2A8MXV6 281 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms